Wall clock time and date at job start Thu Apr 9 2020 14:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.48537 * 111.00373 * 2 1 4 4 C 1.54932 * 103.22696 * 159.71672 * 3 2 1 5 5 C 1.54595 * 102.92484 * 322.58632 * 4 3 2 6 6 C 1.50700 * 110.30510 * 263.04207 * 5 4 3 7 7 H 1.07996 * 120.00371 * 356.94301 * 6 5 4 8 8 C 1.37879 * 119.99765 * 176.94295 * 6 5 4 9 9 N 1.31512 * 120.00064 * 187.67978 * 8 6 5 10 10 Si 1.86803 * 119.99894 * 7.67642 * 8 6 5 11 11 H 1.48498 * 109.47033 * 84.65099 * 10 8 6 12 12 H 1.48499 * 109.47249 * 204.64596 * 10 8 6 13 13 H 1.48494 * 109.47185 * 324.64898 * 10 8 6 14 14 C 1.52996 * 110.39428 * 140.91964 * 5 4 3 15 15 F 1.39905 * 109.46895 * 302.77800 * 14 5 4 16 16 F 1.39903 * 109.47500 * 62.77954 * 14 5 4 17 17 C 1.47909 * 110.99668 * 117.39521 * 2 1 3 18 18 H 1.09004 * 109.46794 * 60.12778 * 1 2 3 19 19 H 1.09003 * 109.47570 * 180.12481 * 1 2 3 20 20 H 1.08999 * 109.47345 * 300.12898 * 1 2 3 21 21 H 1.09000 * 110.66024 * 278.15437 * 3 2 1 22 22 H 1.09001 * 110.66438 * 41.28347 * 3 2 1 23 23 H 1.09002 * 110.72629 * 80.94662 * 4 3 2 24 24 H 1.09008 * 110.72422 * 204.22659 * 4 3 2 25 25 H 0.97003 * 119.99676 * 179.97438 * 9 8 6 26 26 H 1.09000 * 109.47376 * 182.78080 * 14 5 4 27 27 H 1.09001 * 109.91800 * 333.50749 * 17 2 1 28 28 H 1.08999 * 109.92111 * 94.60537 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 0.5228 5 6 3.2981 0.1053 1.5932 6 6 3.1811 0.7182 2.9649 7 1 3.2591 1.7884 3.0867 8 6 2.9743 -0.0875 4.0646 9 7 2.7217 0.4522 5.2370 10 14 3.0530 -1.9456 3.8891 11 1 4.4649 -2.3934 3.9950 12 1 2.2508 -2.5790 4.9663 13 1 2.5060 -2.3415 2.5666 14 6 4.4891 -0.8537 1.5409 15 9 4.5907 -1.4014 0.2575 16 9 5.6632 -0.1563 1.8446 17 6 1.9989 -0.6354 1.2260 18 1 -0.3633 0.5119 -0.8912 19 1 -0.3634 -1.0277 0.0022 20 1 -0.3634 0.5158 0.8888 21 1 2.0041 1.7976 -1.0096 22 1 1.4237 2.0205 0.6729 23 1 4.1115 0.8835 -0.2786 24 1 3.8123 2.1352 0.9717 25 1 2.5759 -0.1147 6.0105 26 1 4.3436 -1.6537 2.2668 27 1 1.2757 -0.5402 2.0360 28 1 2.2088 -1.6883 1.0377 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261321042.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:05 Heat of formation + Delta-G solvation = -105.645978 kcal Electronic energy + Delta-G solvation = -14560.057368 eV Core-core repulsion = 11860.294106 eV Total energy + Delta-G solvation = -2699.763262 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.83621 -47.76531 -39.97140 -35.38827 -33.40450 -30.75756 -27.53861 -26.69366 -25.19192 -22.31961 -21.11683 -19.15019 -18.54959 -17.90798 -17.26055 -16.59980 -16.08757 -15.43920 -15.07441 -14.97986 -14.69740 -14.18339 -13.95451 -13.73450 -13.36245 -13.05592 -12.88853 -12.55907 -12.34245 -12.15590 -11.86781 -11.81855 -11.34426 -10.96576 -10.74013 -9.37506 -8.44854 -6.50362 1.16221 1.19907 1.28562 2.15039 2.75205 3.01954 3.20486 3.35562 3.75668 3.83632 4.07131 4.23340 4.43488 4.53023 4.55420 4.68980 4.81471 4.94300 5.00058 5.02677 5.15730 5.24917 5.42772 5.89877 6.13370 6.19281 6.55627 7.13136 8.70942 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.028382 B = 0.019183 C = 0.015604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.303000 B = 1459.263222 C = 1793.988273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.527 5.527 3 C 0.048 3.952 4 C -0.103 4.103 5 C -0.012 4.012 6 C -0.509 4.509 7 H 0.047 0.953 8 C 0.032 3.968 9 N -0.927 5.927 10 Si 0.882 3.118 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.208 1.208 14 C 0.254 3.746 15 F -0.208 7.208 16 F -0.209 7.209 17 C 0.047 3.953 18 H 0.088 0.912 19 H 0.074 0.926 20 H 0.019 0.981 21 H 0.102 0.898 22 H 0.038 0.962 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.271 0.729 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 -3.401 -9.224 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.250 5.250 3 C -0.079 4.079 4 C -0.141 4.141 5 C -0.014 4.014 6 C -0.546 4.546 7 H 0.065 0.935 8 C -0.168 4.168 9 N -0.565 5.565 10 Si 0.707 3.293 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.131 1.131 14 C 0.201 3.799 15 F -0.190 7.190 16 F -0.191 7.191 17 C -0.081 4.081 18 H 0.107 0.893 19 H 0.092 0.908 20 H 0.038 0.962 21 H 0.120 0.880 22 H 0.056 0.944 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.076 -3.707 -9.523 10.428 hybrid contribution 0.051 -0.201 1.461 1.476 sum -2.025 -3.908 -8.062 9.185 Atomic orbital electron populations 1.22573 0.86977 1.02576 1.01182 1.64835 1.09169 1.15238 1.35806 1.23129 0.94037 0.89739 1.01045 1.22395 0.97496 0.97815 0.96380 1.20348 0.90408 0.93712 0.96948 1.20842 1.50096 0.94294 0.89416 0.93464 1.25727 0.93492 1.02776 0.94845 1.69981 1.47719 1.37687 1.01066 0.87074 0.79303 0.81536 0.81384 1.19252 1.20561 1.13149 1.22678 0.84561 0.92665 0.80043 1.92899 1.96665 1.86770 1.42651 1.92875 1.51419 1.81562 1.93217 1.23366 0.95778 0.98053 0.90945 0.89295 0.90759 0.96195 0.87957 0.94355 0.91062 0.91654 0.91960 0.90173 0.93974 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.41 127.69 1.20 1.64 15 2 N -0.53 -18.68 5.55 -909.15 -5.05 -23.73 15 3 C 0.05 1.65 6.56 86.65 0.57 2.22 15 4 C -0.10 -4.08 5.90 31.80 0.19 -3.89 15 5 C -0.01 -0.54 0.32 -52.05 -0.02 -0.56 15 6 C -0.51 -27.44 8.22 25.60 0.21 -27.23 15 7 H 0.05 2.84 7.76 -2.91 -0.02 2.82 15 8 C 0.03 1.75 5.23 84.66 0.44 2.19 15 9 N -0.93 -54.92 13.96 21.45 0.30 -54.63 15 10 Si 0.88 39.40 23.19 68.60 1.59 40.99 15 11 H -0.27 -11.64 6.92 99.48 0.69 -10.96 15 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 13 H -0.21 -8.21 4.25 99.48 0.42 -7.79 15 14 C 0.25 11.18 3.61 71.98 0.26 11.44 15 15 F -0.21 -8.50 16.11 44.97 0.72 -7.77 15 16 F -0.21 -9.71 16.88 44.97 0.76 -8.95 15 17 C 0.05 1.92 3.89 86.44 0.34 2.26 15 18 H 0.09 2.08 8.14 -2.38 -0.02 2.06 15 19 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 20 H 0.02 0.61 7.99 -2.39 -0.02 0.59 15 21 H 0.10 2.88 8.14 -2.39 -0.02 2.86 15 22 H 0.04 1.39 8.00 -2.39 -0.02 1.37 15 23 H 0.07 2.67 7.31 -2.39 -0.02 2.66 15 24 H 0.06 2.67 7.65 -2.38 -0.02 2.65 15 25 H 0.27 15.05 8.31 -92.71 -0.77 14.28 15 26 H 0.08 3.52 2.97 -2.39 -0.01 3.52 15 27 H 0.04 1.85 6.35 -2.39 -0.02 1.84 15 28 H 0.07 2.86 5.89 -2.39 -0.01 2.84 15 Total: -1.00 -59.39 223.76 2.37 -57.02 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.86 Total: 8.99 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 3.19 Total: -11.93 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -4.75 Total: -78.36 kcal Atomic # 9 Polarization: -18.21 SS G_CDS: 1.48 Total: -16.72 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.59 Total: 40.99 kcal Total: -59.39 2.37 -57.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321042.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.626 kcal (2) G-P(sol) polarization free energy of solvation -59.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds