Wall clock time and date at job start Thu Apr 9 2020 14:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99996 * 2 1 4 4 H 1.48497 * 109.47384 * 264.62543 * 3 2 1 5 5 H 1.48509 * 109.47165 * 24.62588 * 3 2 1 6 6 H 1.48502 * 109.47457 * 144.62451 * 3 2 1 7 7 C 1.37876 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99915 * 14.31961 * 7 2 1 9 9 C 1.50699 * 119.99810 * 194.31428 * 7 2 1 10 10 C 1.53009 * 109.50598 * 302.39158 * 9 7 2 11 11 F 1.39900 * 109.46655 * 294.59177 * 10 9 7 12 12 F 1.39896 * 109.47402 * 174.59638 * 10 9 7 13 13 C 1.53114 * 109.53712 * 62.48844 * 9 7 2 14 14 C 1.53126 * 109.15975 * 62.30445 * 13 9 7 15 15 C 1.53038 * 109.27749 * 57.65495 * 14 13 9 16 16 N 1.46847 * 109.52372 * 300.82198 * 15 14 13 17 17 C 1.46849 * 111.20043 * 61.74048 * 16 15 14 18 18 H 0.97002 * 120.00228 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.46683 * 54.59188 * 10 9 7 20 20 H 1.09006 * 109.52676 * 182.20923 * 13 9 7 21 21 H 1.08998 * 109.52199 * 302.40213 * 13 9 7 22 22 H 1.09001 * 109.50332 * 297.71734 * 14 13 9 23 23 H 1.09001 * 109.53503 * 177.61208 * 14 13 9 24 24 H 1.08998 * 109.46223 * 180.80562 * 15 14 13 25 25 H 1.09001 * 109.45360 * 60.82818 * 15 14 13 26 26 H 1.00898 * 111.00082 * 185.83550 * 16 15 14 27 27 H 1.08995 * 109.46768 * 178.24060 * 17 16 15 28 28 H 1.09006 * 109.46097 * 58.27076 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6102 1.9809 -1.3939 5 1 1.3943 2.6828 0.5834 6 1 3.4853 1.4757 0.8105 7 6 2.0045 -1.1940 -0.0005 8 1 1.4897 -2.1146 -0.2323 9 6 3.4764 -1.2144 0.3221 10 6 4.2258 -0.3037 -0.6526 11 9 4.1318 -0.8277 -1.9464 12 9 5.5713 -0.2259 -0.2777 13 6 3.6935 -0.7188 1.7545 14 6 2.9905 -1.6696 2.7273 15 6 3.5354 -3.0862 2.5318 16 7 3.3030 -3.5146 1.1465 17 6 4.0072 -2.6443 0.1963 18 1 -0.4850 0.8400 0.0004 19 1 3.7844 0.6927 -0.6311 20 1 4.7609 -0.6964 1.9744 21 1 3.2777 0.2833 1.8601 22 1 1.9181 -1.6622 2.5324 23 1 3.1766 -1.3463 3.7515 24 1 3.0268 -3.7683 3.2130 25 1 4.6053 -3.0956 2.7401 26 1 3.5675 -4.4797 1.0173 27 1 3.8413 -3.0053 -0.8187 28 1 5.0749 -2.6558 0.4157 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261334707.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:09 Heat of formation + Delta-G solvation = -87.255293 kcal Electronic energy + Delta-G solvation = -14710.407719 eV Core-core repulsion = 12011.441937 eV Total energy + Delta-G solvation = -2698.965782 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.09408 -45.99736 -38.06081 -33.35505 -31.31627 -30.58731 -25.52407 -24.58102 -23.29524 -21.02154 -18.78642 -17.05980 -16.67806 -16.24132 -15.84057 -14.69377 -13.99254 -13.77706 -13.43039 -13.08443 -12.94585 -12.50530 -12.40169 -12.16471 -12.06416 -11.76601 -11.09098 -10.51832 -10.21973 -10.14928 -10.01059 -9.69030 -9.27549 -8.73184 -8.52367 -7.65097 -6.20888 -4.13491 3.04876 3.08080 3.23390 4.20465 4.62875 4.89142 5.06505 5.23039 5.64668 5.67300 5.73177 5.82772 6.05122 6.06995 6.23360 6.28124 6.43866 6.48908 6.66605 6.86113 7.13103 7.23694 7.57749 7.76082 8.06618 8.45595 9.00026 9.41018 10.92494 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.028969 B = 0.020860 C = 0.016204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.315025 B = 1341.945417 C = 1727.551818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.078 3.922 3 Si 0.833 3.167 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.480 4.480 8 H 0.095 0.905 9 C 0.009 3.991 10 C 0.241 3.759 11 F -0.204 7.204 12 F -0.226 7.226 13 C -0.117 4.117 14 C -0.104 4.104 15 C 0.066 3.934 16 N -0.668 5.668 17 C 0.085 3.915 18 H 0.266 0.734 19 H 0.081 0.919 20 H 0.038 0.962 21 H 0.065 0.935 22 H 0.091 0.909 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.014 0.986 26 H 0.329 0.671 27 H 0.073 0.927 28 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.440 -1.970 3.134 8.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.125 4.125 3 Si 0.664 3.336 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.174 1.174 7 C -0.517 4.517 8 H 0.113 0.887 9 C 0.007 3.993 10 C 0.187 3.813 11 F -0.185 7.185 12 F -0.207 7.207 13 C -0.155 4.155 14 C -0.142 4.142 15 C -0.063 4.063 16 N -0.298 5.298 17 C -0.044 4.044 18 H 0.076 0.924 19 H 0.098 0.902 20 H 0.057 0.943 21 H 0.083 0.917 22 H 0.109 0.891 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.032 0.968 26 H 0.145 0.855 27 H 0.091 0.909 28 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 6.673 -1.534 3.061 7.500 hybrid contribution 1.476 0.859 -0.091 1.710 sum 8.149 -0.675 2.970 8.699 Atomic orbital electron populations 1.69890 1.05874 1.26851 1.49027 1.24974 0.94600 0.98019 0.94905 0.88057 0.80694 0.86034 0.78796 1.20231 1.21143 1.17376 1.20634 0.88757 0.95871 1.46460 0.88691 1.19557 0.97496 0.91147 0.91100 1.23342 0.77351 0.99911 0.80655 1.92868 1.96012 1.88944 1.40719 1.92843 1.38736 1.97588 1.91553 1.22008 0.97906 0.99667 0.95931 1.21426 1.03152 0.93103 0.96483 1.21840 0.96798 0.97656 0.90014 1.60021 1.61824 1.04666 1.03287 1.21687 0.92724 0.93777 0.96220 0.92386 0.90200 0.94303 0.91690 0.89075 0.93463 0.91802 0.96809 0.85476 0.90852 0.97048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.70 13.96 55.43 0.77 -24.93 15 2 C 0.08 2.13 5.35 -17.82 -0.10 2.04 15 3 Si 0.83 19.99 22.91 -169.99 -3.89 16.10 15 4 H -0.27 -6.60 7.09 56.52 0.40 -6.20 15 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.25 -5.51 4.61 56.52 0.26 -5.25 15 7 C -0.48 -12.80 7.01 -34.44 -0.24 -13.04 15 8 H 0.10 2.82 7.91 -52.49 -0.41 2.40 15 9 C 0.01 0.21 0.22 -155.58 -0.03 0.17 15 10 C 0.24 5.57 3.52 37.16 0.13 5.70 15 11 F -0.20 -4.81 16.46 2.25 0.04 -4.77 15 12 F -0.23 -4.91 16.25 2.25 0.04 -4.87 15 13 C -0.12 -2.51 4.17 -26.61 -0.11 -2.62 15 14 C -0.10 -2.03 5.84 -26.65 -0.16 -2.18 15 15 C 0.07 1.15 6.55 -3.83 -0.03 1.13 15 16 N -0.67 -12.65 6.39 -113.81 -0.73 -13.38 15 17 C 0.09 1.76 4.96 -3.83 -0.02 1.74 15 18 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 19 H 0.08 1.91 2.01 -51.93 -0.10 1.80 15 20 H 0.04 0.78 7.61 -51.93 -0.40 0.38 15 21 H 0.06 1.44 4.31 -51.93 -0.22 1.22 15 22 H 0.09 2.05 7.36 -51.93 -0.38 1.67 15 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 15 26 H 0.33 5.18 8.90 -39.29 -0.35 4.83 15 27 H 0.07 1.54 7.71 -51.93 -0.40 1.14 15 28 H 0.01 0.22 7.93 -51.93 -0.41 -0.19 15 LS Contribution 218.84 15.07 3.30 3.30 Total: -1.00 -28.25 218.84 -4.25 -32.50 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -3.23 Total: 3.11 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -0.55 Total: -7.06 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.05 Total: -38.31 kcal Atomic # 9 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -3.89 Total: 16.10 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -28.25 -4.25 -32.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334707.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.755 kcal (2) G-P(sol) polarization free energy of solvation -28.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds