Wall clock time and date at job start Thu Apr 9 2020 14:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.38348 * 119.91542 * 265.00276 * 3 2 1 5 5 C 1.38018 * 120.09372 * 179.97438 * 4 3 2 6 6 C 1.39111 * 119.90999 * 0.02562 * 5 4 3 7 7 N 1.39295 * 120.08811 * 180.02562 * 6 5 4 8 8 C 1.36846 * 120.00345 * 359.97438 * 7 6 5 9 9 H 1.07997 * 120.00051 * 0.02562 * 8 7 6 10 10 C 1.38793 * 120.00076 * 180.02562 * 8 7 6 11 11 N 1.31597 * 120.00095 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00109 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46857 * 89.99355 * 12 10 8 14 14 H 1.48494 * 109.47019 * 209.99643 * 12 10 8 15 15 H 1.48497 * 109.46772 * 329.99970 * 12 10 8 16 16 C 1.39060 * 119.81898 * 0.02562 * 6 5 4 17 17 C 1.38077 * 119.90823 * 359.70327 * 16 6 5 18 18 C 1.50702 * 119.95404 * 180.31257 * 17 16 6 19 19 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 20 20 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 21 21 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 23 23 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 24 24 H 1.08007 * 119.95253 * 0.02562 * 4 3 2 25 25 H 1.08003 * 120.05115 * 180.02562 * 5 4 3 26 26 H 0.97000 * 119.99331 * 180.02562 * 7 6 5 27 27 H 0.96990 * 119.99970 * 180.02562 * 11 10 8 28 28 H 1.07999 * 120.04537 * 179.97438 * 16 6 5 29 29 H 1.09001 * 109.47191 * 270.25299 * 18 17 16 30 30 H 1.09005 * 109.47161 * 30.25749 * 18 17 16 31 31 H 1.08998 * 109.46909 * 150.25285 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3609 2.0365 -1.1946 5 6 2.8208 3.3378 -1.1989 6 6 2.9544 4.0302 0.0002 7 7 3.4178 5.3439 0.0001 8 6 3.7427 5.9548 -1.1805 9 1 3.6395 5.4186 -2.1123 10 6 4.2048 7.2635 -1.1805 11 7 4.3301 7.9171 -0.0452 12 14 4.6491 8.0972 -2.7921 13 1 3.4516 8.7824 -3.3414 14 1 5.7240 9.0937 -2.5540 15 1 5.1246 7.0782 -3.7619 16 6 2.6242 3.4074 1.1989 17 6 2.1595 2.1072 1.1940 18 6 1.7946 1.4337 2.4918 19 1 -0.3633 0.5137 0.8901 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 2.2565 1.4983 -2.1252 25 1 3.0766 3.8179 -2.1319 26 1 3.5108 5.8253 0.8370 27 1 4.6527 8.8318 -0.0453 28 1 2.7269 3.9415 2.1319 29 1 2.6715 0.9303 2.8990 30 1 1.4420 2.1812 3.2025 31 1 1.0064 0.7025 2.3126 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300817653.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:11 Heat of formation + Delta-G solvation = -10.115839 kcal Electronic energy + Delta-G solvation = -12778.886248 eV Core-core repulsion = 10637.495013 eV Total energy + Delta-G solvation = -2141.391235 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34744 -37.41971 -34.62836 -33.06868 -32.74851 -29.32088 -27.50211 -26.34100 -23.87707 -22.65821 -20.97850 -19.39653 -17.88749 -16.70094 -16.29718 -15.87705 -15.34139 -14.78488 -14.53782 -14.03431 -13.79182 -13.64793 -13.55222 -13.28273 -12.90321 -12.73324 -12.69805 -12.40076 -12.08603 -11.79147 -11.53616 -11.41040 -11.23857 -10.42889 -9.37544 -8.44196 -8.34387 -5.69250 0.82757 0.97368 1.39426 1.47460 1.52284 2.28938 2.92193 3.41084 3.50670 4.17072 4.21243 4.39163 4.46108 4.64425 4.75647 4.80039 4.94168 4.95979 4.99023 5.12475 5.19649 5.22480 5.37157 5.42184 5.50966 5.61996 5.80632 5.91796 6.00687 6.15308 6.55100 6.85678 7.57121 7.69809 8.75240 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.058218 B = 0.007406 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.831692 B = 3779.663405 C = 4159.278642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 C -0.197 4.197 4 C -0.060 4.060 5 C -0.247 4.247 6 C 0.191 3.809 7 N -0.597 5.597 8 C -0.315 4.315 9 H 0.100 0.900 10 C -0.037 4.037 11 N -0.938 5.938 12 Si 0.997 3.003 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.262 1.262 16 C -0.252 4.252 17 C -0.032 4.032 18 C -0.109 4.109 19 H 0.050 0.950 20 H 0.043 0.957 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.127 0.873 25 H 0.101 0.899 26 H 0.388 0.612 27 H 0.272 0.728 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 -12.336 0.511 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.201 4.201 4 C -0.079 4.079 5 C -0.271 4.271 6 C 0.075 3.925 7 N -0.204 5.204 8 C -0.445 4.445 9 H 0.117 0.883 10 C -0.234 4.234 11 N -0.579 5.579 12 Si 0.821 3.179 13 H -0.199 1.199 14 H -0.206 1.206 15 H -0.186 1.186 16 C -0.277 4.277 17 C -0.033 4.033 18 C -0.166 4.166 19 H 0.069 0.931 20 H 0.062 0.938 21 H 0.089 0.911 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.145 0.855 25 H 0.119 0.881 26 H 0.221 0.779 27 H 0.081 0.919 28 H 0.122 0.878 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.780 -11.946 0.367 12.872 hybrid contribution 0.509 1.395 -0.289 1.513 sum -4.272 -10.551 0.078 11.383 Atomic orbital electron populations 1.21768 0.95082 1.01783 1.01439 1.20287 0.95862 0.91386 1.02440 1.19496 1.10395 0.98199 0.91986 1.20835 0.95947 0.93071 0.98054 1.20557 1.13557 0.96972 0.96044 1.18302 0.94103 0.85140 0.94928 1.40924 1.61770 1.09280 1.08406 1.19962 1.40404 0.96610 0.87499 0.88256 1.26132 0.98110 0.97120 1.02022 1.69801 1.48076 1.12530 1.27497 0.84842 0.77951 0.77995 0.77139 1.19895 1.20552 1.18612 1.20363 1.14546 0.97577 0.95179 1.19636 0.95275 0.92280 0.96076 1.20857 1.02226 1.00464 0.93037 0.93063 0.93820 0.91067 0.90764 0.91406 0.85520 0.88077 0.77862 0.91879 0.87834 0.90516 0.91920 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.70 71.98 0.70 -2.41 16 2 C -0.06 -1.53 5.36 29.85 0.16 -1.37 16 3 C -0.20 -6.62 5.14 -19.82 -0.10 -6.73 16 4 C -0.06 -2.24 9.67 22.24 0.22 -2.03 16 5 C -0.25 -11.12 9.30 22.43 0.21 -10.91 16 6 C 0.19 9.22 6.62 38.36 0.25 9.47 16 7 N -0.60 -32.17 5.43 -184.29 -1.00 -33.17 16 8 C -0.31 -17.47 9.56 84.04 0.80 -16.67 16 9 H 0.10 5.32 5.68 -2.91 -0.02 5.30 16 10 C -0.04 -1.99 5.50 84.86 0.47 -1.52 16 11 N -0.94 -53.83 13.05 21.65 0.28 -53.55 16 12 Si 1.00 42.97 29.55 68.60 2.03 45.00 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 14 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 16 C -0.25 -10.71 9.55 22.43 0.21 -10.50 16 17 C -0.03 -1.12 5.88 -19.88 -0.12 -1.24 16 18 C -0.11 -2.85 9.21 71.24 0.66 -2.19 16 19 H 0.05 1.13 6.88 -2.39 -0.02 1.12 16 20 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 21 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.07 1.61 6.99 -2.39 -0.02 1.59 16 23 H 0.07 1.53 8.05 -2.39 -0.02 1.51 16 24 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 25 H 0.10 4.69 5.96 -2.91 -0.02 4.67 16 26 H 0.39 21.51 7.90 -92.71 -0.73 20.78 16 27 H 0.27 14.71 8.31 -92.72 -0.77 13.94 16 28 H 0.10 4.25 8.06 -2.91 -0.02 4.23 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.57 8.09 -2.38 -0.02 1.55 16 31 H 0.08 1.84 5.39 -2.39 -0.01 1.83 16 Total: -1.00 -60.52 258.64 5.16 -55.36 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.39 Total: 32.46 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 3.46 Total: -46.09 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -0.72 Total: -86.72 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -60.52 5.16 -55.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300817653.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.240 kcal (2) G-P(sol) polarization free energy of solvation -60.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds