Wall clock time and date at job start Thu Apr 9 2020 14:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34426 * 126.10457 * 2 1 4 4 C 1.30785 * 109.31843 * 179.97438 * 3 2 1 5 5 N 1.34401 * 108.55464 * 0.05775 * 4 3 2 6 6 C 1.33863 * 126.09616 * 179.97438 * 2 1 3 7 7 C 1.50707 * 128.68474 * 359.93545 * 6 2 1 8 8 C 1.53492 * 108.06155 * 195.74735 * 7 6 2 9 9 H 1.08999 * 109.49892 * 71.24452 * 8 7 6 10 10 C 1.50696 * 109.50182 * 191.34508 * 8 7 6 11 11 H 1.08000 * 119.99972 * 359.83172 * 10 8 7 12 12 C 1.37882 * 120.00098 * 179.83320 * 10 8 7 13 13 N 1.31508 * 119.99784 * 359.97438 * 12 10 8 14 14 Si 1.86797 * 119.99690 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47487 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46994 * 120.00006 * 14 12 10 17 17 H 1.48500 * 109.47440 * 239.99623 * 14 12 10 18 18 C 1.53115 * 109.30828 * 311.29651 * 8 7 6 19 19 C 1.46455 * 128.45925 * 179.86697 * 5 4 3 20 20 H 1.09007 * 109.46918 * 270.04626 * 1 2 3 21 21 H 1.09000 * 109.47124 * 30.04107 * 1 2 3 22 22 H 1.08997 * 109.47408 * 150.04280 * 1 2 3 23 23 H 1.08006 * 125.72005 * 180.02562 * 4 3 2 24 24 H 1.08999 * 109.74427 * 76.10560 * 7 6 2 25 25 H 1.09004 * 109.78361 * 315.41221 * 7 6 2 26 26 H 0.97003 * 119.99596 * 180.02562 * 13 12 10 27 27 H 1.09002 * 109.43363 * 189.98258 * 18 8 7 28 28 H 1.08996 * 109.43141 * 309.88825 * 18 8 7 29 29 H 1.09001 * 109.63933 * 77.57900 * 19 5 4 30 30 H 1.09005 * 109.55557 * 317.11628 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2991 1.0861 0.0000 4 6 3.5512 0.7084 0.0006 5 7 3.5927 -0.6350 -0.0004 6 6 2.2956 -1.0816 0.0005 7 6 1.9000 -2.5359 0.0025 8 6 3.1307 -3.3633 0.3983 9 1 3.3461 -3.2119 1.4560 10 6 2.8583 -4.8234 0.1438 11 1 1.9042 -5.1330 -0.2566 12 6 3.8270 -5.7643 0.4223 13 7 4.9889 -5.3873 0.9095 14 14 3.4895 -7.5741 0.1061 15 1 2.1184 -7.7337 -0.4415 16 1 4.4766 -8.0983 -0.8717 17 1 3.6054 -8.3291 1.3796 18 6 4.3327 -2.9145 -0.4373 19 6 4.7671 -1.5101 -0.0029 20 1 -0.3633 0.0008 1.0277 21 1 -0.3633 0.8896 -0.5145 22 1 -0.3634 -0.8903 -0.5131 23 1 4.4082 1.3658 0.0011 24 1 1.5647 -2.8276 -0.9928 25 1 1.0989 -2.6993 0.7234 26 1 5.6706 -6.0492 1.1050 27 1 5.1577 -3.6113 -0.2893 28 1 4.0559 -2.8989 -1.4914 29 1 5.1945 -1.5525 0.9990 30 1 5.5082 -1.1241 -0.7029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259861275.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:20 Heat of formation + Delta-G solvation = 25.258110 kcal Electronic energy + Delta-G solvation = -13451.676342 eV Core-core repulsion = 11246.393126 eV Total energy + Delta-G solvation = -2205.283216 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.14546 -37.81049 -35.02367 -33.86446 -31.18667 -30.70994 -27.77203 -26.17598 -24.40594 -22.64763 -21.14044 -19.69389 -18.46850 -17.50002 -16.61804 -16.52528 -15.26194 -14.94696 -14.88293 -14.57415 -14.30515 -13.63207 -13.54879 -13.12822 -12.92195 -12.84729 -12.73351 -12.44520 -12.16063 -11.77231 -11.37809 -10.92092 -10.73198 -10.46969 -10.23815 -9.01825 -8.14169 -6.27218 1.24208 1.40858 1.44503 1.54587 2.07354 2.18726 2.42092 3.13965 3.77835 3.91565 4.04518 4.15583 4.29756 4.45164 4.52249 4.65944 4.70650 4.91463 4.94846 5.09308 5.11438 5.18928 5.26918 5.54592 5.63944 5.83107 5.91838 6.01482 6.28955 6.48654 6.82220 7.19350 7.41537 8.91010 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.053235 B = 0.009291 C = 0.008108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.846425 B = 3012.803318 C = 3452.559218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.034 4.034 3 N -0.529 5.529 4 C 0.173 3.827 5 N -0.454 5.454 6 C -0.027 4.027 7 C -0.030 4.030 8 C 0.045 3.955 9 H -0.005 1.005 10 C -0.531 4.531 11 H 0.057 0.943 12 C 0.016 3.984 13 N -0.914 5.914 14 Si 0.954 3.046 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.283 1.283 18 C -0.119 4.119 19 C 0.109 3.891 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.239 0.761 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.263 0.737 27 H 0.092 0.908 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 6.529 -2.313 7.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.161 4.161 3 N -0.249 5.249 4 C -0.108 4.108 5 N -0.136 5.136 6 C -0.142 4.142 7 C -0.068 4.068 8 C 0.027 3.973 9 H 0.013 0.987 10 C -0.569 4.569 11 H 0.075 0.925 12 C -0.183 4.183 13 N -0.554 5.554 14 Si 0.780 3.220 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.209 1.209 18 C -0.157 4.157 19 C -0.012 4.012 20 H 0.088 0.912 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.255 0.745 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.493 7.186 -2.259 7.680 hybrid contribution 0.543 -1.840 0.064 1.920 sum -0.950 5.346 -2.196 5.857 Atomic orbital electron populations 1.19995 0.86229 1.02844 1.02421 1.20731 0.97636 0.88010 1.09747 1.70300 1.01261 1.30878 1.22476 1.25386 0.97709 0.82125 1.05606 1.45634 1.07258 1.07657 1.53098 1.21407 0.84484 0.97588 1.10709 1.20212 0.99064 0.86292 1.01258 1.18682 0.91116 0.93690 0.93842 0.98668 1.21525 1.00339 0.92229 1.42834 0.92505 1.25681 0.94999 1.02881 0.94697 1.69939 1.05704 1.34932 1.44797 0.85566 0.78408 0.80352 0.77705 1.19213 1.20562 1.20874 1.21818 1.02404 0.93307 0.98184 1.22155 0.85438 0.90552 1.03042 0.91165 0.90936 0.90721 0.74542 0.91263 0.90958 0.92790 0.88949 0.94284 0.90441 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.27 71.24 0.73 -0.95 16 2 C -0.03 -1.26 7.09 41.17 0.29 -0.97 16 3 N -0.53 -19.69 11.27 -188.96 -2.13 -21.82 16 4 C 0.17 5.67 12.66 180.38 2.28 7.95 16 5 N -0.45 -16.59 3.13 -514.87 -1.61 -18.20 16 6 C -0.03 -1.06 6.56 40.73 0.27 -0.79 16 7 C -0.03 -1.25 5.25 30.02 0.16 -1.10 16 8 C 0.05 2.19 2.12 -11.34 -0.02 2.16 16 9 H 0.00 -0.26 8.12 -2.39 -0.02 -0.28 16 10 C -0.53 -27.88 8.55 25.60 0.22 -27.67 16 11 H 0.06 2.94 7.74 -2.91 -0.02 2.91 16 12 C 0.02 0.86 5.27 84.66 0.45 1.30 16 13 N -0.91 -49.51 11.30 21.45 0.24 -49.27 16 14 Si 0.95 41.71 29.54 68.60 2.03 43.73 16 15 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 18 C -0.12 -5.19 5.09 30.73 0.16 -5.03 16 19 C 0.11 3.83 7.00 86.49 0.61 4.43 16 20 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.07 2.03 8.01 -2.39 -0.02 2.01 16 23 H 0.24 5.32 8.06 -2.91 -0.02 5.29 16 24 H 0.07 2.84 8.11 -2.39 -0.02 2.82 16 25 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 26 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 27 H 0.09 4.49 5.87 -2.39 -0.01 4.48 16 28 H 0.04 1.69 8.11 -2.39 -0.02 1.67 16 29 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 Total: -1.00 -60.45 249.45 4.78 -55.67 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.12 Total: 10.53 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 5.13 Total: -20.65 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -3.50 Total: -89.29 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -60.45 4.78 -55.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861275.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.929 kcal (2) G-P(sol) polarization free energy of solvation -60.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds