Wall clock time and date at job start Thu Apr 9 2020 14:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00146 * 2 1 4 4 H 1.48499 * 109.47370 * 239.99908 * 3 2 1 5 5 H 1.48503 * 109.46743 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47027 * 119.99814 * 3 2 1 7 7 C 1.37878 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00662 * 173.09783 * 7 2 1 9 9 C 1.50700 * 119.99823 * 353.08939 * 7 2 1 10 10 C 1.53002 * 115.54825 * 84.98973 * 9 7 2 11 11 C 1.52994 * 109.47187 * 65.23539 * 10 9 7 12 12 C 1.50697 * 109.47454 * 177.99648 * 11 10 9 13 13 C 1.39877 * 126.04029 * 90.02651 * 12 11 10 14 14 N 1.30836 * 108.20494 * 179.97438 * 13 12 11 15 15 N 1.40086 * 108.20296 * 0.02562 * 14 13 12 16 16 H 0.97000 * 126.03184 * 180.02562 * 15 14 13 17 17 C 1.34943 * 107.92808 * 359.75790 * 15 14 13 18 18 C 1.53005 * 117.50204 * 230.65721 * 9 7 2 19 19 C 1.53000 * 117.50252 * 299.31757 * 9 7 2 20 20 H 0.97001 * 119.99825 * 5.03467 * 1 2 3 21 21 H 1.08997 * 109.47224 * 305.23833 * 10 9 7 22 22 H 1.08995 * 109.47395 * 185.23955 * 10 9 7 23 23 H 1.09004 * 109.47086 * 58.00201 * 11 10 9 24 24 H 1.08994 * 109.47567 * 298.00048 * 11 10 9 25 25 H 1.07998 * 125.89437 * 0.02562 * 13 12 11 26 26 H 1.08002 * 126.13061 * 180.24520 * 17 15 14 27 27 H 1.08995 * 117.49673 * 215.00630 * 18 9 7 28 28 H 1.09001 * 117.49617 * 0.02562 * 18 9 7 29 29 H 1.08997 * 117.49763 * 359.97438 * 19 9 7 30 30 H 1.09007 * 117.49529 * 144.97041 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0787 -1.1974 -0.1129 9 6 1.2593 -2.4945 0.1559 10 6 0.6857 -3.0855 -1.1335 11 6 1.8313 -3.4777 -2.0686 12 6 1.2680 -4.1049 -3.3177 13 6 0.9107 -3.4288 -4.4889 14 7 0.4632 -4.3081 -5.3482 15 7 0.5213 -5.5734 -4.7499 16 1 0.2522 -6.4108 -5.1588 17 6 1.0232 -5.4223 -3.5064 18 6 1.7617 -3.4732 1.2193 19 6 0.4598 -2.7001 1.4441 20 1 -0.4850 0.8368 -0.0737 21 1 0.0544 -2.3443 -1.6235 22 1 0.0921 -3.9683 -0.8960 23 1 2.4827 -4.1923 -1.5653 24 1 2.4037 -2.5891 -2.3346 25 1 0.9910 -2.3647 -4.6553 26 1 1.1966 -6.2112 -2.7894 27 1 1.6835 -4.5380 1.0002 28 1 2.6310 -3.1763 1.8060 29 1 0.4732 -1.8949 2.1786 30 1 -0.4751 -3.2560 1.3728 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259863419.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:22 Heat of formation + Delta-G solvation = 83.643698 kcal Electronic energy + Delta-G solvation = -13010.134815 eV Core-core repulsion = 10807.383388 eV Total energy + Delta-G solvation = -2202.751427 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.78237 -36.72644 -32.67268 -31.81951 -30.89865 -27.98551 -25.35857 -22.98309 -21.59190 -20.96163 -19.52844 -18.80227 -17.28638 -15.79173 -14.57459 -14.27325 -14.16815 -13.80336 -13.27178 -12.94270 -12.44011 -11.93813 -11.39522 -11.23069 -10.88970 -10.72676 -10.61226 -10.33083 -10.06488 -9.74655 -9.33489 -9.29314 -8.65904 -8.36527 -8.15239 -7.73046 -5.94086 -4.00127 2.20217 3.19069 3.20896 3.34845 3.40131 3.42536 4.46248 5.20080 5.22672 5.34608 5.47185 5.83841 5.93013 6.16535 6.37233 6.45068 6.48807 6.63121 6.79064 6.84923 6.95511 7.09758 7.18543 7.28024 7.43697 7.55389 7.61832 7.85744 7.97090 7.97762 8.56074 9.00997 9.64501 11.13956 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.034690 B = 0.009100 C = 0.007842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.950715 B = 3076.196449 C = 3569.684675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.072 3.928 3 Si 0.885 3.115 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.494 4.494 8 H 0.058 0.942 9 C 0.050 3.950 10 C -0.062 4.062 11 C -0.033 4.033 12 C -0.211 4.211 13 C 0.057 3.943 14 N -0.308 5.308 15 N -0.488 5.488 16 H 0.433 0.567 17 C 0.040 3.960 18 C -0.216 4.216 19 C -0.164 4.164 20 H 0.259 0.741 21 H 0.065 0.935 22 H 0.024 0.976 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.182 0.818 26 H 0.171 0.829 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -8.688 -5.038 10.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.131 4.131 3 Si 0.713 3.287 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.050 3.950 10 C -0.100 4.100 11 C -0.072 4.072 12 C -0.222 4.222 13 C -0.130 4.130 14 N -0.131 5.131 15 N -0.197 5.197 16 H 0.275 0.725 17 C -0.106 4.106 18 C -0.254 4.254 19 C -0.201 4.201 20 H 0.069 0.931 21 H 0.084 0.916 22 H 0.043 0.957 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.199 0.801 26 H 0.188 0.812 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.896 -8.715 -6.124 10.689 hybrid contribution 0.511 0.590 0.737 1.073 sum 1.407 -8.125 -5.387 9.850 Atomic orbital electron populations 1.69983 1.05822 1.26595 1.49116 1.24959 0.94740 0.98658 0.94737 0.86775 0.79717 0.83535 0.78645 1.20205 1.21413 1.20357 1.20403 0.92938 0.88966 1.50899 0.92378 1.18889 0.96827 0.93207 0.86124 1.21027 0.95722 0.97520 0.95702 1.19856 0.97840 0.99360 0.90127 1.20591 1.10500 0.92255 0.98836 1.23910 0.97640 0.99761 0.91652 1.77224 1.24968 0.88680 1.22256 1.46195 1.52984 1.08541 1.11965 0.72473 1.22346 1.00872 0.98780 0.88565 1.22989 0.98190 0.95632 1.08548 1.22526 0.92110 1.01150 1.04359 0.93097 0.91591 0.95729 0.92702 0.90499 0.80059 0.81211 0.91995 0.90860 0.90494 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 12.95 55.43 0.72 -24.08 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 3 Si 0.89 20.94 29.55 -169.99 -5.02 15.91 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.49 -13.18 8.26 -34.44 -0.28 -13.47 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.05 1.21 1.33 -155.66 -0.21 1.00 16 10 C -0.06 -1.35 5.07 -26.73 -0.14 -1.49 16 11 C -0.03 -0.63 5.54 -27.89 -0.15 -0.78 16 12 C -0.21 -3.55 5.35 -105.05 -0.56 -4.11 16 13 C 0.06 0.96 11.96 -17.36 -0.21 0.75 16 14 N -0.31 -5.06 12.70 30.63 0.39 -4.67 16 15 N -0.49 -6.50 7.36 30.45 0.22 -6.27 16 16 H 0.43 4.06 8.96 -182.61 -1.64 2.42 16 17 C 0.04 0.56 11.90 -17.22 -0.21 0.36 16 18 C -0.22 -4.71 9.96 -26.69 -0.27 -4.98 16 19 C -0.16 -3.92 9.45 -26.69 -0.25 -4.17 16 20 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 21 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 22 H 0.02 0.51 8.09 -51.93 -0.42 0.09 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.08 1.55 7.77 -51.93 -0.40 1.15 16 25 H 0.18 2.81 8.06 -52.49 -0.42 2.38 16 26 H 0.17 1.83 8.06 -52.49 -0.42 1.40 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 29 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 264.02 15.07 3.98 3.98 Total: -1.00 -29.84 264.02 -7.47 -37.32 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.39 Total: 2.85 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -2.37 Total: -25.03 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 1.33 Total: -35.03 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.84 -7.47 -37.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863419.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.961 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds