Wall clock time and date at job start Thu Apr 9 2020 14:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38343 * 120.44942 * 2 1 4 4 C 1.38838 * 118.50594 * 179.97438 * 3 2 1 5 5 C 1.38064 * 119.33042 * 359.97438 * 4 3 2 6 6 N 1.31944 * 120.85067 * 0.02563 * 5 4 3 7 7 C 1.32425 * 121.62819 * 359.97438 * 6 5 4 8 8 N 1.39001 * 119.71009 * 180.02562 * 7 6 5 9 9 C 1.46508 * 119.99597 * 0.02562 * 8 7 6 10 10 H 1.09001 * 109.47362 * 34.99997 * 9 8 7 11 11 C 1.52994 * 109.47046 * 274.99657 * 9 8 7 12 12 C 1.50703 * 109.46669 * 154.99780 * 9 8 7 13 13 H 1.07995 * 120.00580 * 5.45911 * 12 9 8 14 14 C 1.37880 * 119.99701 * 185.45757 * 12 9 8 15 15 N 1.31516 * 119.99960 * 9.55987 * 14 12 9 16 16 Si 1.86798 * 120.00015 * 189.56160 * 14 12 9 17 17 H 1.48502 * 109.47389 * 84.99466 * 16 14 12 18 18 H 1.48501 * 109.47310 * 204.99397 * 16 14 12 19 19 H 1.48500 * 109.47234 * 324.99380 * 16 14 12 20 20 H 1.08995 * 109.47072 * 90.00022 * 1 2 3 21 21 H 1.09002 * 109.46662 * 210.00186 * 1 2 3 22 22 H 1.08995 * 109.47169 * 329.99545 * 1 2 3 23 23 H 1.07998 * 120.74840 * 0.25405 * 3 2 1 24 24 H 1.08000 * 120.33919 * 180.02562 * 4 3 2 25 25 H 1.07998 * 119.57855 * 180.02562 * 5 4 3 26 26 H 0.96992 * 120.00409 * 179.97438 * 8 7 6 27 27 H 1.09002 * 109.47302 * 183.67348 * 11 9 8 28 28 H 1.09004 * 109.47456 * 303.67526 * 11 9 8 29 29 H 1.09003 * 109.46959 * 63.67179 * 11 9 8 30 30 H 0.97002 * 119.99902 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1926 0.0000 4 6 3.5957 1.1455 0.0005 5 6 4.2308 -0.0804 0.0016 6 7 3.5362 -1.2022 0.0016 7 6 2.2120 -1.1991 0.0011 8 7 1.5202 -2.4048 0.0016 9 6 2.2563 -3.6715 0.0033 10 1 3.1663 -3.5622 0.5934 11 6 2.6223 -4.0506 -1.4330 12 6 1.3948 -4.7522 0.6042 13 1 0.3693 -4.5406 0.8689 14 6 1.9157 -6.0111 0.8159 15 7 3.2060 -6.2214 0.6726 16 14 0.7889 -7.4179 1.3063 17 1 0.1946 -8.0240 0.0878 18 1 1.5705 -8.4458 2.0395 19 1 -0.2945 -6.9024 2.1814 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.6878 2.1390 0.0041 24 1 4.1725 2.0586 0.0010 25 1 5.3100 -0.1217 0.0025 26 1 0.5503 -2.4075 0.0016 27 1 3.1122 -5.0243 -1.4382 28 1 1.7171 -4.0961 -2.0387 29 1 3.2981 -3.3015 -1.8455 30 1 3.5725 -7.1072 0.8212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259922361.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:32 Heat of formation + Delta-G solvation = 28.306442 kcal Electronic energy + Delta-G solvation = -13122.123196 eV Core-core repulsion = 10916.972165 eV Total energy + Delta-G solvation = -2205.151031 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.65476 -35.64065 -33.24202 -32.60329 -30.38741 -28.08077 -26.55624 -25.12903 -22.61036 -21.41546 -20.12641 -17.55130 -16.13254 -15.68343 -14.79046 -14.61527 -14.07235 -13.76282 -13.16533 -12.61132 -12.46593 -12.39370 -12.05876 -11.83104 -11.18365 -11.12361 -10.96866 -10.68969 -10.36124 -10.19142 -9.46802 -9.08062 -8.85590 -8.65914 -8.38758 -6.75713 -6.10798 -4.15575 1.82349 2.09009 3.26736 3.33252 3.34884 4.19818 4.43148 4.53152 5.12325 5.22706 5.27219 5.47128 5.54885 5.80680 5.88769 5.92349 6.11916 6.40304 6.57060 6.79446 6.82675 6.98206 7.15806 7.19966 7.56622 7.70869 7.79875 8.08956 8.22773 8.55179 8.83926 9.14453 9.49429 10.97382 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.049758 B = 0.008444 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.589151 B = 3314.972527 C = 3658.353794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.230 4.230 3 C -0.037 4.037 4 C -0.264 4.264 5 C 0.147 3.853 6 N -0.534 5.534 7 C 0.417 3.583 8 N -0.699 5.699 9 C 0.269 3.731 10 H 0.059 0.941 11 C -0.139 4.139 12 C -0.537 4.537 13 H 0.058 0.942 14 C 0.069 3.931 15 N -0.881 5.881 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.275 1.275 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.120 0.880 24 H 0.119 0.881 25 H 0.145 0.855 26 H 0.396 0.604 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.019 0.981 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 10.975 -1.682 11.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.238 4.238 3 C -0.063 4.063 4 C -0.287 4.287 5 C -0.013 4.013 6 N -0.252 5.252 7 C 0.178 3.822 8 N -0.326 5.326 9 C 0.167 3.833 10 H 0.077 0.923 11 C -0.198 4.198 12 C -0.575 4.575 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.518 5.518 16 Si 0.724 3.276 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.200 1.200 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.138 0.862 24 H 0.137 0.863 25 H 0.162 0.838 26 H 0.232 0.768 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.843 9.758 -1.660 10.068 hybrid contribution -1.273 0.009 0.232 1.294 sum -3.115 9.767 -1.428 10.350 Atomic orbital electron populations 1.20485 0.91283 1.02100 1.01489 1.20104 0.96584 0.92885 1.14199 1.21005 0.93948 0.96677 0.94670 1.21560 0.94943 0.98795 1.13452 1.22363 0.99366 0.87262 0.92329 1.67383 1.06371 1.30915 1.20496 1.18460 0.88402 0.86467 0.88879 1.45566 1.08103 1.03620 1.75264 1.18722 0.93260 0.78041 0.93254 0.92319 1.22010 0.98348 1.01078 0.98333 1.21207 0.98047 0.95400 1.42855 0.92357 1.24865 0.94945 0.98677 0.94976 1.69986 1.10820 1.22502 1.48453 0.86553 0.80637 0.81896 0.78557 1.20456 1.21155 1.19974 0.92069 0.91973 0.92111 0.86220 0.86309 0.83777 0.76825 0.91120 0.95708 0.96140 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 9.59 36.01 0.35 -0.97 16 2 C -0.23 -3.90 5.92 -104.26 -0.62 -4.52 16 3 C -0.04 -0.56 9.85 -39.32 -0.39 -0.94 16 4 C -0.26 -3.92 10.10 -39.42 -0.40 -4.32 16 5 C 0.15 2.53 11.17 -17.57 -0.20 2.33 16 6 N -0.53 -11.40 9.20 -12.44 -0.11 -11.52 16 7 C 0.42 8.64 7.44 -155.01 -1.15 7.48 16 8 N -0.70 -15.36 5.12 -55.06 -0.28 -15.64 16 9 C 0.27 6.95 2.44 -69.08 -0.17 6.79 16 10 H 0.06 1.73 7.48 -51.93 -0.39 1.34 16 11 C -0.14 -3.46 9.37 37.15 0.35 -3.11 16 12 C -0.54 -14.60 8.66 -34.44 -0.30 -14.90 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.07 1.89 5.17 -17.82 -0.09 1.80 16 15 N -0.88 -25.28 12.16 55.43 0.67 -24.60 16 16 Si 0.90 20.99 29.55 -169.99 -5.02 15.97 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.06 0.88 6.56 -51.93 -0.34 0.53 16 22 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 23 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 24 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 25 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 26 H 0.40 7.88 6.50 -40.82 -0.27 7.61 16 27 H 0.07 1.89 6.83 -51.93 -0.35 1.54 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 LS Contribution 257.18 15.07 3.88 3.88 Total: -1.00 -29.78 257.18 -7.33 -37.11 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -3.85 Total: 5.17 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.62 Total: -10.37 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.28 Total: -51.76 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.78 -7.33 -37.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259922361.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.418 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds