Wall clock time and date at job start Thu Apr 9 2020 14:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38343 * 120.44942 * 2 1 4 4 C 1.38838 * 118.50594 * 179.97438 * 3 2 1 5 5 C 1.38064 * 119.33042 * 359.97438 * 4 3 2 6 6 N 1.31944 * 120.85067 * 0.02563 * 5 4 3 7 7 C 1.32425 * 121.62819 * 359.97438 * 6 5 4 8 8 N 1.39001 * 119.71009 * 180.02562 * 7 6 5 9 9 C 1.46508 * 119.99597 * 0.02562 * 8 7 6 10 10 H 1.09001 * 109.47362 * 34.99997 * 9 8 7 11 11 C 1.52994 * 109.47046 * 274.99657 * 9 8 7 12 12 C 1.50703 * 109.46669 * 154.99780 * 9 8 7 13 13 H 1.07995 * 120.00580 * 5.45911 * 12 9 8 14 14 C 1.37880 * 119.99701 * 185.45757 * 12 9 8 15 15 N 1.31516 * 119.99960 * 9.55987 * 14 12 9 16 16 Si 1.86798 * 120.00015 * 189.56160 * 14 12 9 17 17 H 1.48502 * 109.47389 * 84.99466 * 16 14 12 18 18 H 1.48501 * 109.47310 * 204.99397 * 16 14 12 19 19 H 1.48500 * 109.47234 * 324.99380 * 16 14 12 20 20 H 1.08995 * 109.47072 * 90.00022 * 1 2 3 21 21 H 1.09002 * 109.46662 * 210.00186 * 1 2 3 22 22 H 1.08995 * 109.47169 * 329.99545 * 1 2 3 23 23 H 1.07998 * 120.74840 * 0.25405 * 3 2 1 24 24 H 1.08000 * 120.33919 * 180.02562 * 4 3 2 25 25 H 1.07998 * 119.57855 * 180.02562 * 5 4 3 26 26 H 0.96992 * 120.00409 * 179.97438 * 8 7 6 27 27 H 1.09002 * 109.47302 * 183.67348 * 11 9 8 28 28 H 1.09004 * 109.47456 * 303.67526 * 11 9 8 29 29 H 1.09003 * 109.46959 * 63.67179 * 11 9 8 30 30 H 0.97002 * 119.99902 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1926 0.0000 4 6 3.5957 1.1455 0.0005 5 6 4.2308 -0.0804 0.0016 6 7 3.5362 -1.2022 0.0016 7 6 2.2120 -1.1991 0.0011 8 7 1.5202 -2.4048 0.0016 9 6 2.2563 -3.6715 0.0033 10 1 3.1663 -3.5622 0.5934 11 6 2.6223 -4.0506 -1.4330 12 6 1.3948 -4.7522 0.6042 13 1 0.3693 -4.5406 0.8689 14 6 1.9157 -6.0111 0.8159 15 7 3.2060 -6.2214 0.6726 16 14 0.7889 -7.4179 1.3063 17 1 0.1946 -8.0240 0.0878 18 1 1.5705 -8.4458 2.0395 19 1 -0.2945 -6.9024 2.1814 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.6878 2.1390 0.0041 24 1 4.1725 2.0586 0.0010 25 1 5.3100 -0.1217 0.0025 26 1 0.5503 -2.4075 0.0016 27 1 3.1122 -5.0243 -1.4382 28 1 1.7171 -4.0961 -2.0387 29 1 3.2981 -3.3015 -1.8455 30 1 3.5725 -7.1072 0.8212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259922361.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:32 Heat of formation + Delta-G solvation = 10.095895 kcal Electronic energy + Delta-G solvation = -13122.912864 eV Core-core repulsion = 10916.972165 eV Total energy + Delta-G solvation = -2205.940699 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.03392 -37.38357 -34.82662 -34.19788 -32.05699 -29.70574 -27.84836 -27.19998 -24.15033 -22.72154 -21.93107 -19.23011 -17.81108 -17.39543 -16.44868 -16.03775 -15.51584 -15.20920 -14.80634 -14.36507 -13.95532 -13.62915 -13.56711 -13.23185 -13.06518 -12.84065 -12.64001 -12.36770 -12.26014 -12.09107 -11.16363 -10.91757 -10.52174 -10.26874 -10.01769 -8.30749 -8.16391 -6.31948 0.52896 0.77452 1.41884 1.43358 1.52762 2.37247 2.77325 3.11115 3.18072 3.85985 4.09463 4.30940 4.36446 4.54141 4.78298 4.79658 4.85751 4.93449 5.01011 5.11552 5.28822 5.33671 5.45447 5.55151 5.64493 5.75775 6.01203 6.07606 6.49957 6.82912 6.90172 7.36439 7.67433 8.89311 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.049758 B = 0.008444 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.589151 B = 3314.972527 C = 3658.353794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.229 4.229 3 C -0.037 4.037 4 C -0.242 4.242 5 C 0.119 3.881 6 N -0.582 5.582 7 C 0.381 3.619 8 N -0.710 5.710 9 C 0.283 3.717 10 H 0.011 0.989 11 C -0.122 4.122 12 C -0.552 4.552 13 H 0.064 0.936 14 C 0.018 3.982 15 N -0.916 5.916 16 Si 0.966 3.034 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.266 1.266 20 H 0.073 0.927 21 H 0.052 0.948 22 H 0.089 0.911 23 H 0.163 0.837 24 H 0.159 0.841 25 H 0.163 0.837 26 H 0.403 0.597 27 H 0.045 0.955 28 H 0.034 0.966 29 H 0.018 0.982 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 12.897 -1.651 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.237 4.237 3 C -0.063 4.063 4 C -0.265 4.265 5 C -0.039 4.039 6 N -0.301 5.301 7 C 0.144 3.856 8 N -0.341 5.341 9 C 0.179 3.821 10 H 0.029 0.971 11 C -0.181 4.181 12 C -0.590 4.590 13 H 0.082 0.918 14 C -0.183 4.183 15 N -0.554 5.554 16 Si 0.791 3.209 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.191 1.191 20 H 0.091 0.909 21 H 0.071 0.929 22 H 0.107 0.893 23 H 0.181 0.819 24 H 0.177 0.823 25 H 0.180 0.820 26 H 0.240 0.760 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.200 11.744 -1.632 12.282 hybrid contribution -0.758 -0.391 0.226 0.882 sum -3.958 11.354 -1.406 12.106 Atomic orbital electron populations 1.20546 0.89044 1.03040 1.02533 1.20491 0.98355 0.92150 1.12663 1.21547 0.94122 0.97555 0.93028 1.22024 0.95500 0.99162 1.09769 1.22836 1.00408 0.87471 0.93149 1.67266 1.07496 1.33553 1.21735 1.18797 0.88695 0.87095 0.91043 1.45159 1.08130 1.02978 1.77795 1.18210 0.91719 0.79800 0.92417 0.97064 1.21807 0.98366 0.99504 0.98465 1.21559 0.98420 0.96170 1.42883 0.91827 1.25752 0.96295 1.01286 0.94941 1.70127 1.12662 1.23063 1.49512 0.85457 0.78641 0.78381 0.78455 1.19581 1.21006 1.19086 0.90881 0.92908 0.89256 0.81930 0.82350 0.81968 0.76006 0.93567 0.94687 0.96250 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.34 9.59 71.24 0.68 -1.66 16 2 C -0.23 -7.34 5.92 -19.63 -0.12 -7.45 16 3 C -0.04 -0.96 9.85 22.44 0.22 -0.74 16 4 C -0.24 -6.37 10.10 22.37 0.23 -6.15 16 5 C 0.12 4.01 11.17 84.63 0.95 4.95 16 6 N -0.58 -25.41 9.20 -193.26 -1.78 -27.19 16 7 C 0.38 15.87 7.44 133.05 0.99 16.86 16 8 N -0.71 -31.99 5.12 -328.11 -1.68 -33.67 16 9 C 0.28 15.18 2.44 44.24 0.11 15.29 16 10 H 0.01 0.71 7.48 -2.39 -0.02 0.70 16 11 C -0.12 -6.33 9.37 71.98 0.67 -5.66 16 12 C -0.55 -30.68 8.66 25.60 0.22 -30.46 16 13 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 14 C 0.02 0.98 5.17 84.66 0.44 1.42 16 15 N -0.92 -54.20 12.16 21.45 0.26 -53.94 16 16 Si 0.97 43.36 29.55 68.60 2.03 45.39 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 20 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.05 1.41 6.56 -2.39 -0.02 1.40 16 22 H 0.09 1.70 8.09 -2.39 -0.02 1.68 16 23 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 24 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 25 H 0.16 4.55 8.06 -2.91 -0.02 4.53 16 26 H 0.40 16.28 6.50 -92.71 -0.60 15.68 16 27 H 0.05 2.57 6.83 -2.39 -0.02 2.55 16 28 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -66.63 257.18 3.75 -62.88 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.53 Total: 20.12 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 4.39 Total: -13.59 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -3.20 Total: -114.79 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -66.63 3.75 -62.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259922361.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.974 kcal (2) G-P(sol) polarization free energy of solvation -66.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds