Wall clock time and date at job start Thu Apr 9 2020 14:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38341 * 120.45357 * 2 1 4 4 C 1.38839 * 118.50514 * 180.02562 * 3 2 1 5 5 C 1.38067 * 119.32900 * 0.02562 * 4 3 2 6 6 N 1.31942 * 120.85526 * 359.73797 * 5 4 3 7 7 C 1.32431 * 121.62010 * 0.52974 * 6 5 4 8 8 N 1.39003 * 119.70466 * 179.75327 * 7 6 5 9 9 C 1.46499 * 119.99819 * 359.44586 * 8 7 6 10 10 H 1.08999 * 109.47228 * 325.27646 * 9 8 7 11 11 C 1.52999 * 109.47341 * 85.27806 * 9 8 7 12 12 C 1.50706 * 109.47303 * 205.27671 * 9 8 7 13 13 H 1.07998 * 119.99769 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00286 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00035 * 179.97438 * 14 12 9 16 16 Si 1.86801 * 119.99998 * 0.02562 * 14 12 9 17 17 H 1.48500 * 109.46865 * 89.99417 * 16 14 12 18 18 H 1.48498 * 109.47233 * 209.99802 * 16 14 12 19 19 H 1.48508 * 109.47028 * 329.99943 * 16 14 12 20 20 H 1.08998 * 109.47034 * 269.98128 * 1 2 3 21 21 H 1.09000 * 109.46517 * 29.98346 * 1 2 3 22 22 H 1.09001 * 109.47201 * 149.97596 * 1 2 3 23 23 H 1.08003 * 120.74625 * 0.04423 * 3 2 1 24 24 H 1.08002 * 120.33268 * 180.02562 * 4 3 2 25 25 H 1.08002 * 119.56930 * 180.02562 * 5 4 3 26 26 H 0.97001 * 120.00330 * 179.72806 * 8 7 6 27 27 H 1.08996 * 109.47098 * 180.02562 * 11 9 8 28 28 H 1.09001 * 109.46823 * 300.00095 * 11 9 8 29 29 H 1.08999 * 109.47091 * 59.99755 * 11 9 8 30 30 H 0.97000 * 120.00229 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1926 0.0000 4 6 3.5958 1.1453 -0.0005 5 6 4.2307 -0.0806 -0.0016 6 7 3.5362 -1.2024 0.0031 7 6 2.2119 -1.1992 -0.0015 8 7 1.5201 -2.4048 -0.0015 9 6 2.2560 -3.6715 -0.0087 10 1 3.1659 -3.5598 -0.5982 11 6 2.6220 -4.0570 1.4260 12 6 1.3944 -4.7496 -0.6142 13 1 0.3985 -4.5146 -0.9595 14 6 1.8780 -6.0358 -0.7283 15 7 1.1259 -6.9766 -1.2562 16 14 3.6009 -6.4422 -0.1317 17 1 3.5467 -6.8542 1.2940 18 1 4.1582 -7.5514 -0.9467 19 1 4.4674 -5.2439 -0.2680 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3632 0.8902 -0.5136 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6879 2.1390 0.0007 24 1 4.1726 2.0584 -0.0001 25 1 5.3100 -0.1219 -0.0016 26 1 0.5501 -2.4075 -0.0008 27 1 3.1699 -4.9992 1.4206 28 1 3.2451 -3.2772 1.8639 29 1 1.7120 -4.1687 2.0156 30 1 1.4662 -7.8814 -1.3368 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259922388.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:33 Heat of formation + Delta-G solvation = 37.586049 kcal Electronic energy + Delta-G solvation = -13194.195878 eV Core-core repulsion = 10989.447241 eV Total energy + Delta-G solvation = -2204.748637 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.80548 -35.90094 -33.33599 -32.63379 -30.86614 -28.58957 -26.69353 -25.08365 -22.77872 -21.53727 -20.18337 -17.75036 -16.22193 -16.05554 -14.93448 -14.82625 -14.15150 -13.77608 -13.31374 -13.00698 -12.60872 -12.53616 -12.27504 -12.07575 -11.79552 -11.35204 -11.19948 -10.72441 -10.17101 -9.72786 -9.54709 -9.19876 -9.02388 -8.80309 -8.63095 -6.93127 -6.17270 -4.19034 1.69508 1.95299 3.26120 3.37419 3.42660 4.06627 4.35174 4.38463 4.99188 5.16175 5.18072 5.38127 5.43070 5.68904 5.82213 5.83184 6.00553 6.31591 6.37142 6.43834 6.51007 6.64684 6.68985 6.88837 7.10107 7.29289 7.55120 7.91360 8.12027 8.51915 8.77496 8.94694 9.44107 10.95196 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.046124 B = 0.009532 C = 0.008371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.909427 B = 2936.920069 C = 3344.052956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.223 4.223 3 C -0.037 4.037 4 C -0.259 4.259 5 C 0.145 3.855 6 N -0.541 5.541 7 C 0.416 3.584 8 N -0.692 5.692 9 C 0.245 3.755 10 H 0.051 0.949 11 C -0.158 4.158 12 C -0.535 4.535 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.895 5.895 16 Si 0.887 3.113 17 H -0.278 1.278 18 H -0.295 1.295 19 H -0.260 1.260 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.122 0.878 24 H 0.121 0.879 25 H 0.146 0.854 26 H 0.402 0.598 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.334 13.557 3.452 14.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.231 4.231 3 C -0.062 4.062 4 C -0.283 4.283 5 C -0.014 4.014 6 N -0.259 5.259 7 C 0.177 3.823 8 N -0.320 5.320 9 C 0.141 3.859 10 H 0.068 0.932 11 C -0.217 4.217 12 C -0.573 4.573 13 H 0.095 0.905 14 C -0.126 4.126 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.223 1.223 19 H -0.185 1.185 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.140 0.860 24 H 0.139 0.861 25 H 0.163 0.837 26 H 0.239 0.761 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.821 12.312 3.399 13.080 hybrid contribution 0.116 0.432 0.322 0.551 sum 2.938 12.744 3.720 13.597 Atomic orbital electron populations 1.20516 0.91035 1.02359 1.01684 1.20112 0.96752 0.92723 1.13525 1.21042 0.93933 0.96785 0.94464 1.21585 0.94979 0.98825 1.12895 1.22343 0.99336 0.87253 0.92471 1.67339 1.06419 1.31173 1.20926 1.18434 0.88352 0.86432 0.89086 1.45192 1.08270 1.02780 1.75740 1.19053 0.93643 0.80674 0.92569 0.93167 1.22447 1.00038 0.99153 1.00046 1.21095 1.02466 0.92517 1.41183 0.90464 1.24834 0.97524 0.95899 0.94374 1.69875 1.36920 1.02194 1.44229 0.86844 0.85158 0.78234 0.78048 1.20443 1.22300 1.18471 0.91888 0.91938 0.91759 0.85995 0.86146 0.83709 0.76050 0.93702 0.94579 0.93245 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 9.59 36.01 0.35 -0.95 16 2 C -0.22 -3.60 5.92 -104.26 -0.62 -4.22 16 3 C -0.04 -0.51 9.85 -39.32 -0.39 -0.90 16 4 C -0.26 -3.59 10.10 -39.42 -0.40 -3.99 16 5 C 0.15 2.32 11.17 -17.57 -0.20 2.13 16 6 N -0.54 -10.80 9.20 -12.44 -0.11 -10.91 16 7 C 0.42 8.14 7.45 -155.01 -1.15 6.99 16 8 N -0.69 -14.58 5.12 -55.06 -0.28 -14.86 16 9 C 0.24 5.96 2.16 -69.08 -0.15 5.81 16 10 H 0.05 1.33 6.59 -51.93 -0.34 0.98 16 11 C -0.16 -3.63 8.98 37.16 0.33 -3.30 16 12 C -0.53 -14.85 9.31 -34.44 -0.32 -15.17 16 13 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 14 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 15 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 16 Si 0.89 22.09 24.37 -169.99 -4.14 17.94 16 17 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 18 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 22 H 0.06 0.88 6.56 -51.93 -0.34 0.54 16 23 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 24 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 25 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 26 H 0.40 7.82 6.52 -40.82 -0.27 7.55 16 27 H 0.04 1.05 3.27 -51.93 -0.17 0.88 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 249.07 15.07 3.75 3.75 Total: -1.00 -30.81 249.07 -6.33 -37.14 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.68 Total: 4.66 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.64 Total: -11.50 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.38 Total: -51.99 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.81 -6.33 -37.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259922388.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.723 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds