Wall clock time and date at job start Thu Apr 9 2020 14:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38678 * 120.78737 * 2 1 4 4 C 1.38179 * 119.15799 * 180.23143 * 3 2 1 5 5 N 1.31878 * 120.76850 * 359.79294 * 4 3 2 6 6 C 1.31858 * 121.72944 * 359.97288 * 5 4 3 7 7 C 1.38222 * 120.75809 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.41804 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47415 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47047 * 59.99870 * 8 7 6 11 11 H 1.08004 * 120.00205 * 354.56096 * 10 8 7 12 12 C 1.37881 * 120.00235 * 174.55677 * 10 8 7 13 13 N 1.31518 * 119.99640 * 351.97188 * 12 10 8 14 14 Si 1.86798 * 120.00258 * 171.97606 * 12 10 8 15 15 H 1.48503 * 109.47117 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47726 * 119.99782 * 14 12 10 17 17 H 1.48507 * 109.46908 * 239.99865 * 14 12 10 18 18 C 1.53005 * 109.47303 * 299.99760 * 8 7 6 19 19 N 1.46890 * 109.47141 * 295.54623 * 18 8 7 20 20 H 1.08996 * 109.47302 * 270.24692 * 1 2 3 21 21 H 1.09003 * 109.47127 * 30.24772 * 1 2 3 22 22 H 1.09002 * 109.47200 * 150.24582 * 1 2 3 23 23 H 1.08000 * 120.41727 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.61410 * 179.77060 * 4 3 2 25 25 H 1.07993 * 119.62178 * 180.02562 * 6 5 4 26 26 H 0.96998 * 119.99763 * 180.02562 * 13 12 10 27 27 H 1.08997 * 109.46968 * 175.53921 * 18 8 7 28 28 H 1.09009 * 109.46757 * 55.54902 * 18 8 7 29 29 H 1.00905 * 111.00296 * 174.59622 * 19 18 8 30 30 H 1.00896 * 111.00244 * 298.54816 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1521 -0.0049 5 7 4.2402 0.0002 -0.0054 6 6 3.5983 -1.1516 -0.0008 7 6 2.2167 -1.1908 0.0053 8 6 1.4909 -2.5115 0.0111 9 1 0.4152 -2.3351 0.0159 10 6 1.8769 -3.2914 1.2414 11 1 2.6423 -2.9129 1.9027 12 6 1.2530 -4.4883 1.5230 13 7 0.2163 -4.8729 0.8109 14 14 1.8799 -5.5635 2.9159 15 1 3.0494 -4.9106 3.5574 16 1 0.8030 -5.7491 3.9214 17 1 2.2863 -6.8859 2.3761 18 6 1.8718 -3.3084 -1.2382 19 7 1.4003 -2.5983 -2.4345 20 1 -0.3634 0.0044 1.0276 21 1 -0.3633 0.8878 -0.5177 22 1 -0.3634 -0.8922 -0.5100 23 1 1.6966 2.1378 -0.0004 24 1 4.1582 2.0754 -0.0087 25 1 4.1585 -2.0749 -0.0010 26 1 -0.2229 -5.7147 1.0092 27 1 1.4096 -4.2946 -1.1951 28 1 2.9556 -3.4169 -1.2835 29 1 1.7154 -3.0581 -3.2757 30 1 0.3956 -2.5059 -2.4277 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259923004.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:35 Heat of formation + Delta-G solvation = 18.470288 kcal Electronic energy + Delta-G solvation = -13420.348973 eV Core-core repulsion = 11214.771414 eV Total energy + Delta-G solvation = -2205.577558 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.51492 -35.46023 -33.01614 -32.27143 -30.81663 -27.90459 -26.70362 -24.01886 -22.79453 -21.18956 -19.61633 -16.72500 -15.78086 -15.46975 -14.91876 -14.70064 -13.87695 -13.54081 -13.29120 -12.58145 -12.41725 -12.16742 -11.98875 -11.88160 -11.53406 -11.07020 -10.99987 -10.52022 -10.10115 -9.74771 -9.41556 -8.66852 -8.60968 -8.38964 -7.92606 -7.67692 -6.17080 -4.19495 1.99480 2.16094 3.22719 3.31897 3.37407 4.33659 4.67495 5.14248 5.22504 5.42404 5.58172 5.66131 5.79626 5.97171 6.13039 6.21702 6.33023 6.50569 6.63383 6.73257 6.85828 6.93141 7.16006 7.33517 7.59928 7.76902 7.81550 7.97911 8.23858 8.33391 8.79196 8.85803 9.44899 10.91050 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.032867 B = 0.011316 C = 0.010363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.707528 B = 2473.747936 C = 2701.280568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.055 4.055 3 C -0.180 4.180 4 C 0.061 3.939 5 N -0.497 5.497 6 C 0.099 3.901 7 C -0.056 4.056 8 C 0.080 3.920 9 H 0.051 0.949 10 C -0.512 4.512 11 H 0.060 0.940 12 C 0.066 3.934 13 N -0.888 5.888 14 Si 0.891 3.109 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.071 3.929 19 N -0.856 5.856 20 H 0.067 0.933 21 H 0.055 0.945 22 H 0.078 0.922 23 H 0.118 0.882 24 H 0.139 0.861 25 H 0.148 0.852 26 H 0.261 0.739 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.321 0.679 30 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.289 6.125 -2.895 6.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.062 4.062 3 C -0.200 4.200 4 C -0.096 4.096 5 N -0.207 5.207 6 C -0.058 4.058 7 C -0.058 4.058 8 C 0.061 3.939 9 H 0.069 0.931 10 C -0.551 4.551 11 H 0.078 0.922 12 C -0.136 4.136 13 N -0.526 5.526 14 Si 0.718 3.282 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.059 4.059 19 N -0.383 5.383 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.097 0.903 23 H 0.136 0.864 24 H 0.156 0.844 25 H 0.165 0.835 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.131 0.869 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.518 6.593 -2.623 7.256 hybrid contribution -1.141 -1.549 0.553 2.001 sum 0.377 5.044 -2.070 5.465 Atomic orbital electron populations 1.20756 0.91243 1.02431 1.02146 1.20141 0.96382 0.92648 0.97075 1.21810 0.95581 0.97987 1.04578 1.22330 0.91637 0.95859 0.99727 1.67550 1.41626 0.98660 1.12831 1.22508 0.92107 0.95084 0.96086 1.21189 0.94692 0.96843 0.93031 1.17909 0.96198 0.86733 0.93065 0.93144 1.21125 1.21410 1.04976 1.07575 0.92198 1.24960 0.94354 0.97863 0.96445 1.69949 1.19699 1.22347 1.40616 0.86546 0.79111 0.80480 0.82049 1.19531 1.21014 1.20871 1.21979 0.98109 0.96971 0.88881 1.58992 1.16481 1.58028 1.04830 0.91389 0.92587 0.90280 0.86367 0.84369 0.83490 0.92886 0.93353 0.93458 0.86924 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 9.46 36.00 0.34 -1.53 16 2 C -0.05 -1.07 5.92 -104.32 -0.62 -1.68 16 3 C -0.18 -3.12 9.82 -39.44 -0.39 -3.51 16 4 C 0.06 1.09 11.18 -17.55 -0.20 0.90 16 5 N -0.50 -10.23 10.36 -13.26 -0.14 -10.37 16 6 C 0.10 2.14 9.80 -17.55 -0.17 1.96 16 7 C -0.06 -1.21 4.47 -104.48 -0.47 -1.68 16 8 C 0.08 1.89 1.84 -92.92 -0.17 1.72 16 9 H 0.05 1.26 5.57 -51.93 -0.29 0.98 16 10 C -0.51 -13.40 8.21 -34.44 -0.28 -13.68 16 11 H 0.06 1.60 7.56 -52.48 -0.40 1.20 16 12 C 0.07 1.74 5.19 -17.82 -0.09 1.64 16 13 N -0.89 -23.99 12.09 55.43 0.67 -23.32 16 14 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.07 1.56 5.94 -3.83 -0.02 1.54 16 19 N -0.86 -16.09 9.30 -10.37 -0.10 -16.18 16 20 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 21 H 0.06 0.80 8.10 -51.93 -0.42 0.37 16 22 H 0.08 1.44 6.22 -51.93 -0.32 1.12 16 23 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 24 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 25 H 0.15 3.15 7.56 -52.49 -0.40 2.76 16 26 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.05 1.18 6.75 -51.93 -0.35 0.83 16 28 H 0.05 1.05 7.27 -51.92 -0.38 0.67 16 29 H 0.32 5.29 9.08 -39.29 -0.36 4.93 16 30 H 0.33 5.98 9.05 -39.29 -0.36 5.62 16 LS Contribution 254.15 15.07 3.83 3.83 Total: -1.00 -27.97 254.15 -6.49 -34.46 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -3.67 Total: 10.31 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.07 Total: -14.32 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.44 Total: -49.87 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.97 -6.49 -34.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923004.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.931 kcal (2) G-P(sol) polarization free energy of solvation -27.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds