Wall clock time and date at job start Thu Apr 9 2020 14:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35466 * 126.11457 * 2 1 4 4 C 1.39848 * 107.91324 * 180.02562 * 3 2 1 5 5 N 1.31035 * 108.13402 * 0.02562 * 4 3 2 6 6 N 1.34891 * 126.11286 * 180.02562 * 2 1 3 7 7 C 1.46495 * 126.03355 * 0.02562 * 6 2 1 8 8 C 1.51327 * 109.50887 * 180.02562 * 4 3 2 9 9 C 1.54338 * 105.30498 * 342.72595 * 8 4 3 10 10 C 1.51282 * 142.52627 * 0.02562 * 3 2 1 11 11 H 1.08996 * 110.29651 * 78.28239 * 10 3 2 12 12 C 1.50701 * 110.29372 * 316.25263 * 10 3 2 13 13 H 1.08002 * 119.99892 * 359.97438 * 12 10 3 14 14 C 1.37877 * 120.00235 * 180.02562 * 12 10 3 15 15 N 1.31520 * 119.99750 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00500 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46852 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47342 * 119.99606 * 16 14 12 19 19 H 1.48501 * 109.47304 * 240.00176 * 16 14 12 20 20 H 1.09005 * 109.47341 * 89.99969 * 1 2 3 21 21 H 1.09004 * 109.47554 * 210.00324 * 1 2 3 22 22 H 1.09002 * 109.47822 * 330.00518 * 1 2 3 23 23 H 1.09005 * 109.47268 * 89.99731 * 7 6 2 24 24 H 1.08998 * 109.47372 * 209.99825 * 7 6 2 25 25 H 1.09001 * 109.47268 * 330.00437 * 7 6 2 26 26 H 1.09002 * 110.29394 * 101.71226 * 8 4 3 27 27 H 1.08999 * 110.29509 * 223.74136 * 8 4 3 28 28 H 1.08998 * 110.77159 * 144.87899 * 9 8 4 29 29 H 1.08996 * 110.76941 * 268.28618 * 9 8 4 30 30 H 0.96994 * 120.00132 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3054 1.0943 0.0000 4 6 3.6339 0.6575 -0.0006 5 7 3.6323 -0.6528 -0.0015 6 7 2.3019 -1.0897 -0.0005 7 6 1.8528 -2.4841 -0.0016 8 6 4.5595 1.8547 0.0000 9 6 3.6840 3.0468 -0.4410 10 6 2.2695 2.6067 0.0004 11 1 2.0533 2.9795 1.0016 12 6 1.2359 3.1053 -0.9765 13 1 0.6523 2.4014 -1.5513 14 6 1.0361 4.4600 -1.1372 15 7 1.7479 5.3172 -0.4383 16 14 -0.2445 5.0781 -2.3486 17 1 -0.9033 3.9208 -3.0058 18 1 -1.2621 5.8826 -1.6257 19 1 0.4142 5.9221 -3.3777 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3635 0.8900 0.5137 23 1 1.7417 -2.8293 -1.0296 24 1 2.5883 -3.1032 0.5120 25 1 0.8941 -2.5575 0.5117 26 1 4.9551 2.0261 1.0011 27 1 5.3749 1.7025 -0.7071 28 1 3.9852 3.9590 0.0740 29 1 3.7279 3.1795 -1.5220 30 1 1.6071 6.2702 -0.5511 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259925609.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:40 Heat of formation + Delta-G solvation = 73.324231 kcal Electronic energy + Delta-G solvation = -13438.518756 eV Core-core repulsion = 11235.319844 eV Total energy + Delta-G solvation = -2203.198913 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.69059 -35.80349 -32.80293 -31.45173 -30.74033 -27.67494 -25.81217 -25.37620 -23.26710 -20.34749 -18.85741 -18.22921 -16.15155 -15.46121 -14.98589 -14.49417 -13.82034 -13.42227 -13.15388 -12.68277 -12.19221 -12.02190 -11.85218 -11.59351 -11.24894 -11.03057 -10.88476 -10.61028 -10.45958 -9.97751 -9.75896 -9.07224 -8.91822 -8.36597 -8.27803 -7.18029 -5.95262 -3.97116 2.59379 3.10418 3.32253 3.40625 3.44096 3.70073 4.49515 4.81094 5.30423 5.38167 5.39593 5.48413 5.55448 5.71606 6.05049 6.10351 6.21186 6.34399 6.44287 6.63759 6.89453 6.98890 7.17446 7.38676 7.48387 7.66699 7.89263 7.91933 8.04446 8.51722 8.56076 9.04386 9.66101 11.13593 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.037752 B = 0.011300 C = 0.009159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.501875 B = 2477.302857 C = 3056.477639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.068 3.932 3 C -0.202 4.202 4 C 0.040 3.960 5 N -0.303 5.303 6 N -0.391 5.391 7 C 0.112 3.888 8 C -0.034 4.034 9 C -0.089 4.089 10 C 0.116 3.884 11 H 0.039 0.961 12 C -0.500 4.500 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 H 0.070 0.930 21 H 0.052 0.948 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 -9.282 1.162 9.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.055 4.055 3 C -0.213 4.213 4 C -0.126 4.126 5 N -0.125 5.125 6 N -0.176 5.176 7 C -0.030 4.030 8 C -0.074 4.074 9 C -0.128 4.128 10 C 0.097 3.903 11 H 0.056 0.944 12 C -0.539 4.539 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.715 3.285 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.212 1.212 20 H 0.089 0.911 21 H 0.071 0.929 22 H 0.107 0.893 23 H 0.082 0.918 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.024 -10.303 1.187 10.371 hybrid contribution -1.218 0.902 -0.744 1.688 sum -1.242 -9.401 0.443 9.493 Atomic orbital electron populations 1.20280 0.88047 1.02555 1.02538 1.20075 0.93808 0.86672 1.04953 1.21425 0.91660 0.98447 1.09762 1.23412 0.98541 0.91509 0.99115 1.76857 0.96209 1.11618 1.27865 1.48308 1.03431 1.05100 1.60799 1.21567 1.00235 0.78867 1.02295 1.20745 0.95958 0.89672 1.01020 1.22343 0.95298 0.94446 1.00699 1.17786 0.93131 0.82355 0.97061 0.94361 1.21142 1.19351 0.91178 1.22212 0.92617 1.24969 0.96090 0.97017 0.95958 1.69957 1.40401 1.01821 1.40893 0.86615 0.81732 0.78806 0.81321 1.19902 1.21155 1.21157 0.91126 0.92936 0.89306 0.91850 0.90194 0.90253 0.90992 0.92022 0.90825 0.92229 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.11 36.00 0.36 -0.90 16 2 C 0.07 1.41 6.93 -82.24 -0.57 0.84 16 3 C -0.20 -4.76 6.04 -104.72 -0.63 -5.39 16 4 C 0.04 0.91 8.10 -82.02 -0.66 0.25 16 5 N -0.30 -6.61 12.58 33.85 0.43 -6.18 16 6 N -0.39 -7.52 4.01 -63.87 -0.26 -7.77 16 7 C 0.11 1.46 11.27 59.84 0.67 2.13 16 8 C -0.03 -0.70 6.76 -26.87 -0.18 -0.88 16 9 C -0.09 -2.09 5.76 -25.20 -0.15 -2.23 16 10 C 0.12 2.95 2.75 -91.81 -0.25 2.70 16 11 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 12 C -0.50 -13.60 8.44 -34.44 -0.29 -13.89 16 13 H 0.06 1.52 7.76 -52.49 -0.41 1.11 16 14 C 0.06 1.66 5.34 -17.82 -0.10 1.56 16 15 N -0.89 -25.11 12.50 55.43 0.69 -24.42 16 16 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 21 H 0.05 0.69 7.08 -51.93 -0.37 0.32 16 22 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.08 0.83 7.05 -51.93 -0.37 0.46 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 1.75 7.96 -51.93 -0.41 1.33 16 29 H 0.06 1.46 7.91 -51.93 -0.41 1.05 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 254.53 15.07 3.84 3.84 Total: -1.00 -31.04 254.53 -6.18 -37.22 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -4.06 Total: -2.95 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -1.79 Total: -15.81 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.86 Total: -38.37 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.04 -6.18 -37.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925609.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.544 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds