Wall clock time and date at job start Thu Apr 9 2020 14:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38674 * 120.41750 * 2 1 4 4 C 1.38630 * 118.41731 * 179.97438 * 3 2 1 5 5 C 1.38222 * 119.16715 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.61973 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47367 * 244.99537 * 6 5 4 8 8 N 1.46898 * 109.47434 * 5.00028 * 6 5 4 9 9 C 1.53002 * 109.47165 * 124.99968 * 6 5 4 10 10 C 1.50692 * 109.47441 * 174.99984 * 9 6 5 11 11 H 1.08010 * 120.00083 * 359.97438 * 10 9 6 12 12 C 1.37881 * 120.00420 * 180.02562 * 10 9 6 13 13 N 1.31514 * 119.99748 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00177 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47059 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47353 * 119.99505 * 14 12 10 17 17 H 1.48496 * 109.47030 * 239.99689 * 14 12 10 18 18 N 1.31864 * 120.75787 * 359.71740 * 5 4 3 19 19 C 1.31878 * 121.72742 * 0.57422 * 18 5 4 20 20 H 1.09001 * 109.47187 * 270.01939 * 1 2 3 21 21 H 1.09001 * 109.47270 * 30.01863 * 1 2 3 22 22 H 1.09001 * 109.47064 * 150.01915 * 1 2 3 23 23 H 1.07997 * 120.79107 * 0.02562 * 3 2 1 24 24 H 1.08003 * 120.41305 * 180.02562 * 4 3 2 25 25 H 1.00899 * 110.99915 * 59.99568 * 8 6 5 26 26 H 1.00894 * 111.00595 * 183.95532 * 8 6 5 27 27 H 1.09005 * 109.46901 * 294.99983 * 9 6 5 28 28 H 1.09000 * 109.46933 * 54.99974 * 9 6 5 29 29 H 0.96999 * 120.00017 * 180.02562 * 13 12 10 30 30 H 1.08002 * 119.62007 * 179.71105 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0005 5 6 4.2257 -0.0822 0.0005 6 6 5.7312 -0.1467 0.0017 7 1 6.0764 -0.5959 -0.9295 8 7 6.2794 1.2107 0.1234 9 6 6.2044 -0.9957 1.1834 10 6 7.7005 -1.1624 1.1150 11 1 8.2582 -0.7085 0.3090 12 6 8.3575 -1.8951 2.0807 13 7 7.6784 -2.4481 3.0618 14 14 10.2122 -2.1010 1.9963 15 1 10.7359 -1.3861 0.8047 16 1 10.8293 -1.5367 3.2235 17 1 10.5457 -3.5444 1.8932 18 7 3.5254 -1.1996 0.0056 19 6 2.2067 -1.1916 -0.0004 20 1 -0.3633 0.0003 1.0277 21 1 -0.3634 0.8898 -0.5141 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6890 2.1423 0.0004 24 1 4.1735 2.0592 0.0010 25 1 5.9737 1.6487 0.9794 26 1 7.2865 1.2009 0.0619 27 1 5.9362 -0.5007 2.1168 28 1 5.7275 -1.9749 1.1413 29 1 8.1406 -2.9633 3.7414 30 1 1.6672 -2.1273 -0.0007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259928224.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:43 Heat of formation + Delta-G solvation = 18.201922 kcal Electronic energy + Delta-G solvation = -12865.718945 eV Core-core repulsion = 10660.129750 eV Total energy + Delta-G solvation = -2205.589196 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.90316 -35.72832 -33.03520 -32.42064 -31.02260 -28.11621 -27.08064 -24.08323 -23.13842 -21.69383 -19.86710 -16.91902 -16.20212 -15.71655 -14.65547 -14.60537 -14.26708 -13.94641 -13.33689 -12.86485 -12.69286 -12.36179 -12.19541 -12.18562 -11.63501 -11.23650 -10.97679 -10.60077 -10.34826 -9.89764 -9.38064 -9.16118 -8.85623 -8.45483 -8.29910 -7.74795 -6.02884 -4.07092 1.53536 1.70938 3.29116 3.36967 3.40257 4.22536 4.42863 4.71602 5.02139 5.10298 5.22722 5.31823 5.34837 5.59449 5.63278 5.81276 5.93037 6.08415 6.18220 6.43822 6.52418 6.61472 6.79852 7.15068 7.57314 7.61818 7.89454 8.07141 8.19432 8.35828 8.56857 9.00414 9.57299 11.08039 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.061547 B = 0.007150 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.826043 B = 3914.873948 C = 4205.599882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.163 4.163 3 C -0.085 4.085 4 C -0.159 4.159 5 C 0.148 3.852 6 C 0.136 3.864 7 H 0.087 0.913 8 N -0.842 5.842 9 C 0.005 3.995 10 C -0.525 4.525 11 H 0.057 0.943 12 C 0.059 3.941 13 N -0.891 5.891 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 N -0.472 5.472 19 C 0.097 3.903 20 H 0.067 0.933 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.125 0.875 24 H 0.144 0.856 25 H 0.330 0.670 26 H 0.351 0.649 27 H 0.012 0.988 28 H 0.034 0.966 29 H 0.260 0.740 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 6.423 -5.047 13.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.165 4.165 3 C -0.111 4.111 4 C -0.179 4.179 5 C 0.010 3.990 6 C 0.024 3.976 7 H 0.105 0.895 8 N -0.371 5.371 9 C -0.034 4.034 10 C -0.563 4.563 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.529 5.529 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 N -0.180 5.180 19 C -0.061 4.061 20 H 0.085 0.915 21 H 0.081 0.919 22 H 0.084 0.916 23 H 0.143 0.857 24 H 0.162 0.838 25 H 0.141 0.859 26 H 0.165 0.835 27 H 0.030 0.970 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.718 5.670 -5.566 13.342 hybrid contribution 0.994 0.178 1.020 1.436 sum -9.724 5.848 -4.546 12.223 Atomic orbital electron populations 1.20632 0.90911 1.02435 1.02049 1.20821 0.97024 0.94597 1.04096 1.21427 0.94310 0.97595 0.97774 1.22065 0.94299 1.00243 1.01279 1.21603 0.97296 0.87919 0.92198 1.20350 0.85872 0.89825 1.01590 0.89488 1.59186 1.16174 1.19233 1.42536 1.19721 0.96065 0.96158 0.91461 1.21210 0.92248 1.32868 1.09954 0.92495 1.25017 0.98322 0.95515 0.95398 1.69994 1.35500 1.34183 1.13257 0.86530 0.85604 0.77926 0.77896 1.19656 1.21091 1.20998 1.67452 1.07581 1.31547 1.11408 1.22596 0.90008 0.97062 0.96413 0.91454 0.91895 0.91617 0.85657 0.83845 0.85852 0.83473 0.96996 0.94738 0.93017 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.04 36.01 0.36 -0.66 16 2 C -0.16 -2.30 5.90 -104.48 -0.62 -2.92 16 3 C -0.09 -1.22 9.86 -39.28 -0.39 -1.61 16 4 C -0.16 -2.66 9.20 -39.44 -0.36 -3.02 16 5 C 0.15 2.95 6.17 -82.59 -0.51 2.44 16 6 C 0.14 2.91 3.23 -68.87 -0.22 2.69 16 7 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 8 N -0.84 -15.58 7.95 -5.66 -0.04 -15.62 16 9 C 0.00 0.12 4.54 -27.89 -0.13 0.00 16 10 C -0.52 -14.53 8.55 -34.44 -0.29 -14.82 16 11 H 0.06 1.51 7.15 -52.48 -0.38 1.13 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 N -0.47 -9.62 9.77 -9.47 -0.09 -9.71 16 19 C 0.10 1.60 10.86 -17.55 -0.19 1.41 16 20 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 22 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 23 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 24 H 0.14 2.21 6.64 -52.48 -0.35 1.86 16 25 H 0.33 5.85 8.27 -39.29 -0.32 5.52 16 26 H 0.35 6.59 7.90 -39.29 -0.31 6.28 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.03 1.00 7.79 -51.93 -0.40 0.60 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 258.46 15.07 3.90 3.90 Total: -1.00 -31.13 258.46 -6.83 -37.96 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -3.85 Total: 8.13 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -2.45 Total: -14.89 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.60 Total: -51.59 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.13 -6.83 -37.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259928224.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.157 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds