Wall clock time and date at job start Thu Apr 9 2020 14:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38674 * 120.41750 * 2 1 4 4 C 1.38630 * 118.41731 * 179.97438 * 3 2 1 5 5 C 1.38222 * 119.16715 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.61973 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47367 * 244.99537 * 6 5 4 8 8 N 1.46898 * 109.47434 * 5.00028 * 6 5 4 9 9 C 1.53002 * 109.47165 * 124.99968 * 6 5 4 10 10 C 1.50692 * 109.47441 * 174.99984 * 9 6 5 11 11 H 1.08010 * 120.00083 * 359.97438 * 10 9 6 12 12 C 1.37881 * 120.00420 * 180.02562 * 10 9 6 13 13 N 1.31514 * 119.99748 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00177 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47059 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47353 * 119.99505 * 14 12 10 17 17 H 1.48496 * 109.47030 * 239.99689 * 14 12 10 18 18 N 1.31864 * 120.75787 * 359.71740 * 5 4 3 19 19 C 1.31878 * 121.72742 * 0.57422 * 18 5 4 20 20 H 1.09001 * 109.47187 * 270.01939 * 1 2 3 21 21 H 1.09001 * 109.47270 * 30.01863 * 1 2 3 22 22 H 1.09001 * 109.47064 * 150.01915 * 1 2 3 23 23 H 1.07997 * 120.79107 * 0.02562 * 3 2 1 24 24 H 1.08003 * 120.41305 * 180.02562 * 4 3 2 25 25 H 1.00899 * 110.99915 * 59.99568 * 8 6 5 26 26 H 1.00894 * 111.00595 * 183.95532 * 8 6 5 27 27 H 1.09005 * 109.46901 * 294.99983 * 9 6 5 28 28 H 1.09000 * 109.46933 * 54.99974 * 9 6 5 29 29 H 0.96999 * 120.00017 * 180.02562 * 13 12 10 30 30 H 1.08002 * 119.62007 * 179.71105 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0005 5 6 4.2257 -0.0822 0.0005 6 6 5.7312 -0.1467 0.0017 7 1 6.0764 -0.5959 -0.9295 8 7 6.2794 1.2107 0.1234 9 6 6.2044 -0.9957 1.1834 10 6 7.7005 -1.1624 1.1150 11 1 8.2582 -0.7085 0.3090 12 6 8.3575 -1.8951 2.0807 13 7 7.6784 -2.4481 3.0618 14 14 10.2122 -2.1010 1.9963 15 1 10.7359 -1.3861 0.8047 16 1 10.8293 -1.5367 3.2235 17 1 10.5457 -3.5444 1.8932 18 7 3.5254 -1.1996 0.0056 19 6 2.2067 -1.1916 -0.0004 20 1 -0.3633 0.0003 1.0277 21 1 -0.3634 0.8898 -0.5141 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6890 2.1423 0.0004 24 1 4.1735 2.0592 0.0010 25 1 5.9737 1.6487 0.9794 26 1 7.2865 1.2009 0.0619 27 1 5.9362 -0.5007 2.1168 28 1 5.7275 -1.9749 1.1413 29 1 8.1406 -2.9633 3.7414 30 1 1.6672 -2.1273 -0.0007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259928224.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:43 Heat of formation + Delta-G solvation = -3.719160 kcal Electronic energy + Delta-G solvation = -12866.669514 eV Core-core repulsion = 10660.129750 eV Total energy + Delta-G solvation = -2206.539765 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.21821 -37.38643 -34.72779 -34.03701 -32.33778 -29.98587 -28.42092 -25.83658 -24.45275 -23.24098 -21.44558 -18.86552 -17.53662 -17.35274 -16.62588 -15.86960 -15.73309 -15.14695 -14.91045 -14.41618 -14.15696 -13.88633 -13.53560 -13.45120 -13.15521 -12.84998 -12.67172 -12.34853 -12.18886 -11.87789 -11.23366 -10.65376 -10.60801 -10.23863 -9.66667 -9.37293 -8.22381 -6.35240 0.25563 0.47899 1.38859 1.39947 1.53089 2.38432 2.91840 3.10599 3.34556 3.96267 3.98811 4.01394 4.19608 4.31947 4.48927 4.73473 4.84732 4.88279 4.89991 5.00392 5.24663 5.25954 5.41655 5.42784 5.54283 5.75694 5.92141 6.14217 6.30793 6.66226 6.81877 7.23665 7.34881 8.89773 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.061547 B = 0.007150 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.826043 B = 3914.873948 C = 4205.599882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.147 4.147 3 C -0.083 4.083 4 C -0.158 4.158 5 C 0.108 3.892 6 C 0.149 3.851 7 H 0.071 0.929 8 N -0.821 5.821 9 C 0.019 3.981 10 C -0.537 4.537 11 H 0.068 0.932 12 C -0.001 4.001 13 N -0.935 5.935 14 Si 0.970 3.030 15 H -0.256 1.256 16 H -0.278 1.278 17 H -0.283 1.283 18 N -0.517 5.517 19 C 0.075 3.925 20 H 0.080 0.920 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.167 0.833 24 H 0.155 0.845 25 H 0.337 0.663 26 H 0.350 0.650 27 H -0.018 1.018 28 H -0.008 1.008 29 H 0.262 0.738 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.669 7.964 -5.761 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.149 4.149 3 C -0.108 4.108 4 C -0.178 4.178 5 C -0.029 4.029 6 C 0.037 3.963 7 H 0.089 0.911 8 N -0.350 5.350 9 C -0.020 4.020 10 C -0.575 4.575 11 H 0.087 0.913 12 C -0.199 4.199 13 N -0.575 5.575 14 Si 0.794 3.206 15 H -0.180 1.180 16 H -0.204 1.204 17 H -0.209 1.209 18 N -0.226 5.226 19 C -0.082 4.082 20 H 0.098 0.902 21 H 0.103 0.897 22 H 0.097 0.903 23 H 0.185 0.815 24 H 0.173 0.827 25 H 0.149 0.851 26 H 0.164 0.836 27 H 0.000 1.000 28 H 0.010 0.990 29 H 0.071 0.929 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.602 7.234 -6.295 15.052 hybrid contribution 1.116 -0.308 1.245 1.700 sum -10.486 6.926 -5.049 13.544 Atomic orbital electron populations 1.20738 0.87387 1.04276 1.03356 1.21306 0.99404 0.93481 1.00722 1.21906 0.93297 0.99487 0.96126 1.22185 0.95811 0.99113 1.00654 1.21368 0.96259 0.89415 0.95851 1.19967 0.87979 0.90009 0.98386 0.91111 1.59161 1.15969 1.17131 1.42736 1.19517 0.95508 0.94626 0.92377 1.21618 0.93102 1.32635 1.10095 0.91343 1.26025 1.03870 0.95071 0.94892 1.70149 1.37849 1.35212 1.14289 0.85327 0.78891 0.77843 0.78522 1.18008 1.20405 1.20892 1.67310 1.09807 1.32670 1.12848 1.23064 0.89009 0.99274 0.96870 0.90173 0.89658 0.90293 0.81537 0.82701 0.85125 0.83581 0.99954 0.98978 0.92885 0.81607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.58 10.04 71.24 0.72 -0.87 16 2 C -0.15 -3.76 5.90 -19.77 -0.12 -3.88 16 3 C -0.08 -2.11 9.86 22.47 0.22 -1.89 16 4 C -0.16 -5.10 9.20 22.36 0.21 -4.90 16 5 C 0.11 4.42 6.17 42.55 0.26 4.68 16 6 C 0.15 6.65 3.23 44.17 0.14 6.79 16 7 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 8 N -0.82 -30.43 7.95 -171.81 -1.37 -31.79 16 9 C 0.02 1.04 4.54 29.85 0.14 1.17 16 10 C -0.54 -30.45 8.55 25.60 0.22 -30.24 16 11 H 0.07 3.64 7.15 -2.91 -0.02 3.62 16 12 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 13 N -0.93 -58.46 13.29 21.45 0.28 -58.17 16 14 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 15 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 N -0.52 -21.79 9.77 -183.89 -1.80 -23.59 16 19 C 0.08 2.45 10.86 84.67 0.92 3.37 16 20 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.08 1.02 8.10 -2.39 -0.02 1.00 16 22 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 23 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 24 H 0.16 4.50 6.64 -2.91 -0.02 4.48 16 25 H 0.34 11.89 8.27 -89.69 -0.74 11.15 16 26 H 0.35 13.07 7.90 -89.70 -0.71 12.36 16 27 H -0.02 -1.08 8.14 -2.38 -0.02 -1.09 16 28 H -0.01 -0.52 7.79 -2.39 -0.02 -0.54 16 29 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.17 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -70.23 258.46 2.01 -68.22 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -0.30 Total: 24.08 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 3.17 Total: -25.34 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -2.88 Total: -113.55 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -70.23 2.01 -68.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259928224.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.496 kcal (2) G-P(sol) polarization free energy of solvation -70.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds