Wall clock time and date at job start Thu Apr 9 2020 14:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38227 * 119.61547 * 2 1 4 4 C 1.38634 * 119.16086 * 179.97438 * 3 2 1 5 5 C 1.38672 * 118.41954 * 0.02562 * 4 3 2 6 6 C 1.38180 * 119.16126 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.61684 * 180.02562 * 6 5 4 8 8 H 1.09009 * 109.47161 * 5.00322 * 7 6 5 9 9 N 1.46899 * 109.47601 * 245.00663 * 7 6 5 10 10 C 1.52996 * 109.47144 * 125.00045 * 7 6 5 11 11 C 1.50702 * 109.47159 * 185.00130 * 10 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 7 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 N 1.31855 * 119.62262 * 180.24127 * 2 1 3 20 20 H 1.09002 * 109.46868 * 90.00293 * 1 2 3 21 21 H 1.08993 * 109.47015 * 210.00202 * 1 2 3 22 22 H 1.08996 * 109.47737 * 330.00296 * 1 2 3 23 23 H 1.07995 * 120.42003 * 359.97438 * 3 2 1 24 24 H 1.07995 * 120.79099 * 179.97438 * 4 3 2 25 25 H 1.07997 * 120.41623 * 179.97438 * 5 4 3 26 26 H 1.00898 * 111.00374 * 176.04658 * 9 7 6 27 27 H 1.00901 * 110.99243 * 299.99615 * 9 7 6 28 28 H 1.09004 * 109.47066 * 65.00333 * 10 7 6 29 29 H 1.08994 * 109.47405 * 305.00163 * 10 7 6 30 30 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1900 1.2017 0.0000 4 6 3.5763 1.1907 0.0005 5 6 4.2266 -0.0341 0.0005 6 6 3.4766 -1.1946 0.0005 7 6 4.1727 -2.5313 0.0011 8 1 5.2485 -2.3806 0.0911 9 7 3.8804 -3.2362 -1.2541 10 6 3.6740 -3.3655 1.1827 11 6 4.4567 -4.6512 1.2558 12 1 5.2326 -4.8529 0.5321 13 6 4.1866 -5.5672 2.2503 14 7 3.2420 -5.3213 3.1318 15 14 5.1620 -7.1573 2.3455 16 1 6.1598 -7.1926 1.2463 17 1 5.8633 -7.2303 3.6525 18 1 4.2389 -8.3131 2.2139 19 7 2.1587 -1.1462 -0.0048 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3634 0.8899 0.5137 23 1 1.6506 2.1373 -0.0004 24 1 4.1365 2.1140 0.0001 25 1 5.3056 -0.0803 0.0005 26 1 4.3871 -4.1072 -1.3062 27 1 2.8886 -3.3880 -1.3610 28 1 2.6162 -3.5913 1.0472 29 1 3.8102 -2.8041 2.1070 30 1 3.0517 -5.9659 3.8312 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259958895.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:44 Heat of formation + Delta-G solvation = 15.255127 kcal Electronic energy + Delta-G solvation = -12944.920702 eV Core-core repulsion = 10739.203723 eV Total energy + Delta-G solvation = -2205.716978 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.90538 -35.56090 -32.71441 -32.37826 -31.16176 -27.97323 -27.38484 -24.76680 -22.56700 -21.65805 -19.83262 -16.69310 -15.95904 -15.81900 -15.05203 -14.60385 -14.32549 -13.95033 -13.22837 -12.81607 -12.38370 -12.31160 -12.07917 -11.94743 -11.80999 -11.24013 -10.93635 -10.62361 -10.27303 -9.90319 -9.45399 -9.13915 -8.88738 -8.48196 -8.38317 -7.64845 -6.03061 -4.07392 1.51993 1.68944 3.28800 3.36579 3.40000 4.18819 4.42252 4.64525 4.99863 5.12327 5.32159 5.35564 5.51565 5.71045 5.76581 5.84989 5.88638 6.05078 6.18532 6.31433 6.48805 6.65992 6.82769 7.11957 7.52456 7.72962 7.94719 8.09472 8.28797 8.39699 8.55828 9.00123 9.57008 11.07692 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.047800 B = 0.007760 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.638053 B = 3607.284047 C = 3823.514763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.125 3.875 3 C -0.193 4.193 4 C -0.076 4.076 5 C -0.177 4.177 6 C 0.169 3.831 7 C 0.136 3.864 8 H 0.079 0.921 9 N -0.837 5.837 10 C 0.004 3.996 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.470 5.470 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.126 0.874 24 H 0.127 0.873 25 H 0.130 0.870 26 H 0.346 0.654 27 H 0.337 0.663 28 H 0.029 0.971 29 H 0.014 0.986 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.767 10.945 -5.812 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.013 4.013 3 C -0.213 4.213 4 C -0.102 4.102 5 C -0.198 4.198 6 C 0.031 3.969 7 C 0.024 3.976 8 H 0.097 0.903 9 N -0.366 5.366 10 C -0.035 4.035 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.528 5.528 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 N -0.180 5.180 20 H 0.092 0.908 21 H 0.096 0.904 22 H 0.088 0.912 23 H 0.144 0.856 24 H 0.145 0.855 25 H 0.148 0.852 26 H 0.160 0.840 27 H 0.149 0.851 28 H 0.048 0.952 29 H 0.032 0.968 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.993 10.728 -6.027 12.466 hybrid contribution 0.642 -0.765 0.945 1.375 sum -1.351 9.963 -5.082 11.266 Atomic orbital electron populations 1.20672 0.89418 1.03197 1.02606 1.21285 0.96838 0.88507 0.94692 1.21792 0.94950 0.98871 1.05714 1.21456 0.94429 0.97933 0.96396 1.21959 1.01303 0.92951 1.03544 1.21590 0.88982 0.95924 0.90443 1.20531 0.97309 0.88075 0.91666 0.90274 1.59188 1.13836 1.28482 1.35102 1.19733 0.97485 0.93933 0.92321 1.21215 1.19097 1.02879 1.13192 0.92478 1.25021 0.95210 0.98418 0.95619 1.70000 1.30963 1.35782 1.16098 0.86533 0.79999 0.83486 0.77950 1.19660 1.21053 1.21024 1.67356 1.09851 1.28766 1.12018 0.90820 0.90386 0.91240 0.85636 0.85464 0.85167 0.84049 0.85121 0.95236 0.96794 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 10.17 36.00 0.37 -0.94 16 2 C 0.13 2.06 6.78 -82.59 -0.56 1.50 16 3 C -0.19 -2.74 9.74 -39.44 -0.38 -3.12 16 4 C -0.08 -1.08 10.18 -39.27 -0.40 -1.48 16 5 C -0.18 -2.98 9.71 -39.44 -0.38 -3.36 16 6 C 0.17 3.38 5.73 -82.59 -0.47 2.90 16 7 C 0.14 2.94 3.07 -68.87 -0.21 2.73 16 8 H 0.08 1.67 7.87 -51.92 -0.41 1.26 16 9 N -0.84 -16.85 9.18 -5.65 -0.05 -16.90 16 10 C 0.00 0.11 4.43 -27.88 -0.12 -0.02 16 11 C -0.53 -14.59 8.55 -34.44 -0.29 -14.88 16 12 H 0.06 1.52 7.15 -52.49 -0.38 1.14 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 15 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 N -0.47 -9.40 9.82 -5.74 -0.06 -9.46 16 20 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 22 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 23 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 24 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 25 H 0.13 1.92 7.95 -52.49 -0.42 1.51 16 26 H 0.35 6.91 7.90 -39.29 -0.31 6.60 16 27 H 0.34 6.90 8.93 -39.29 -0.35 6.54 16 28 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 261.78 15.07 3.94 3.94 Total: -1.00 -31.26 261.78 -6.96 -38.22 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -3.95 Total: 8.94 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -2.56 Total: -15.07 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.63 Total: -52.55 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.26 -6.96 -38.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958895.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.478 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds