Wall clock time and date at job start Thu Apr 9 2020 14:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38227 * 119.61547 * 2 1 4 4 C 1.38634 * 119.16086 * 179.97438 * 3 2 1 5 5 C 1.38672 * 118.41954 * 0.02562 * 4 3 2 6 6 C 1.38180 * 119.16126 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.61684 * 180.02562 * 6 5 4 8 8 H 1.09009 * 109.47161 * 5.00322 * 7 6 5 9 9 N 1.46899 * 109.47601 * 245.00663 * 7 6 5 10 10 C 1.52996 * 109.47144 * 125.00045 * 7 6 5 11 11 C 1.50702 * 109.47159 * 185.00130 * 10 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 7 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 N 1.31855 * 119.62262 * 180.24127 * 2 1 3 20 20 H 1.09002 * 109.46868 * 90.00293 * 1 2 3 21 21 H 1.08993 * 109.47015 * 210.00202 * 1 2 3 22 22 H 1.08996 * 109.47737 * 330.00296 * 1 2 3 23 23 H 1.07995 * 120.42003 * 359.97438 * 3 2 1 24 24 H 1.07995 * 120.79099 * 179.97438 * 4 3 2 25 25 H 1.07997 * 120.41623 * 179.97438 * 5 4 3 26 26 H 1.00898 * 111.00374 * 176.04658 * 9 7 6 27 27 H 1.00901 * 110.99243 * 299.99615 * 9 7 6 28 28 H 1.09004 * 109.47066 * 65.00333 * 10 7 6 29 29 H 1.08994 * 109.47405 * 305.00163 * 10 7 6 30 30 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1900 1.2017 0.0000 4 6 3.5763 1.1907 0.0005 5 6 4.2266 -0.0341 0.0005 6 6 3.4766 -1.1946 0.0005 7 6 4.1727 -2.5313 0.0011 8 1 5.2485 -2.3806 0.0911 9 7 3.8804 -3.2362 -1.2541 10 6 3.6740 -3.3655 1.1827 11 6 4.4567 -4.6512 1.2558 12 1 5.2326 -4.8529 0.5321 13 6 4.1866 -5.5672 2.2503 14 7 3.2420 -5.3213 3.1318 15 14 5.1620 -7.1573 2.3455 16 1 6.1598 -7.1926 1.2463 17 1 5.8633 -7.2303 3.6525 18 1 4.2389 -8.3131 2.2139 19 7 2.1587 -1.1462 -0.0048 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3634 0.8899 0.5137 23 1 1.6506 2.1373 -0.0004 24 1 4.1365 2.1140 0.0001 25 1 5.3056 -0.0803 0.0005 26 1 4.3871 -4.1072 -1.3062 27 1 2.8886 -3.3880 -1.3610 28 1 2.6162 -3.5913 1.0472 29 1 3.8102 -2.8041 2.1070 30 1 3.0517 -5.9659 3.8312 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259958895.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:44 Heat of formation + Delta-G solvation = -7.108276 kcal Electronic energy + Delta-G solvation = -12945.890451 eV Core-core repulsion = 10739.203723 eV Total energy + Delta-G solvation = -2206.686728 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.19431 -37.27713 -34.62560 -33.71218 -32.55087 -29.93443 -28.65713 -26.48993 -24.23654 -22.91843 -21.49215 -18.72318 -17.29373 -17.12528 -16.66795 -16.53885 -15.74307 -15.24449 -14.75658 -14.36863 -14.15750 -13.78775 -13.67935 -13.18770 -13.05677 -12.87880 -12.69460 -12.35948 -12.21536 -11.88176 -11.23875 -10.67754 -10.64432 -10.21478 -9.76258 -9.35520 -8.22549 -6.35710 0.26128 0.49164 1.39015 1.39119 1.52781 2.38044 2.90886 3.10273 3.39538 3.80663 3.96275 4.13497 4.28415 4.31281 4.58049 4.70219 4.76489 4.81015 4.81439 4.94503 5.22819 5.28613 5.30632 5.39468 5.59984 5.76116 5.92053 6.14245 6.31955 6.67468 6.81500 7.26095 7.34443 8.89315 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.047800 B = 0.007760 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.638053 B = 3607.284047 C = 3823.514763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.101 3.899 3 C -0.180 4.180 4 C -0.070 4.070 5 C -0.186 4.186 6 C 0.130 3.870 7 C 0.146 3.854 8 H 0.083 0.917 9 N -0.823 5.823 10 C 0.020 3.980 11 C -0.538 4.538 12 H 0.069 0.931 13 C -0.001 4.001 14 N -0.933 5.933 15 Si 0.970 3.030 16 H -0.256 1.256 17 H -0.281 1.281 18 H -0.280 1.280 19 N -0.512 5.512 20 H 0.089 0.911 21 H 0.056 0.944 22 H 0.101 0.899 23 H 0.169 0.831 24 H 0.171 0.829 25 H 0.145 0.855 26 H 0.345 0.655 27 H 0.334 0.666 28 H -0.007 1.007 29 H -0.024 1.024 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 12.385 -6.642 14.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.038 4.038 3 C -0.200 4.200 4 C -0.095 4.095 5 C -0.207 4.207 6 C -0.008 4.008 7 C 0.034 3.966 8 H 0.101 0.899 9 N -0.351 5.351 10 C -0.019 4.019 11 C -0.576 4.576 12 H 0.087 0.913 13 C -0.199 4.199 14 N -0.573 5.573 15 Si 0.794 3.206 16 H -0.180 1.180 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.223 5.223 20 H 0.107 0.893 21 H 0.075 0.925 22 H 0.120 0.880 23 H 0.186 0.814 24 H 0.189 0.811 25 H 0.163 0.837 26 H 0.159 0.841 27 H 0.145 0.855 28 H 0.011 0.989 29 H -0.006 1.006 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.271 12.177 -6.878 14.043 hybrid contribution 0.347 -1.104 1.200 1.667 sum -0.924 11.073 -5.678 12.478 Atomic orbital electron populations 1.20753 0.87325 1.03709 1.03747 1.21950 0.98485 0.88612 0.94716 1.22280 0.95265 0.99543 1.02908 1.21961 0.94819 0.98407 0.94319 1.22175 1.02113 0.93052 1.03317 1.21384 0.89643 0.95889 0.93852 1.20293 0.97529 0.88964 0.89804 0.89887 1.59199 1.13558 1.28304 1.34079 1.19514 0.95352 0.94189 0.92821 1.21627 1.19232 1.03417 1.13346 0.91277 1.26036 0.96246 1.02473 0.95156 1.70156 1.32869 1.37331 1.16979 0.85327 0.78527 0.78374 0.78352 1.18002 1.20648 1.20630 1.67240 1.10260 1.31273 1.13486 0.89285 0.92530 0.88022 0.81377 0.81118 0.83678 0.84120 0.85464 0.98906 1.00612 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 10.17 71.23 0.72 -1.66 16 2 C 0.10 3.21 6.78 42.55 0.29 3.50 16 3 C -0.18 -4.50 9.74 22.36 0.22 -4.28 16 4 C -0.07 -1.74 10.18 22.47 0.23 -1.51 16 5 C -0.19 -6.02 9.71 22.36 0.22 -5.81 16 6 C 0.13 5.27 5.73 42.54 0.24 5.51 16 7 C 0.15 6.51 3.07 44.17 0.14 6.65 16 8 H 0.08 3.56 7.87 -2.38 -0.02 3.54 16 9 N -0.82 -33.78 9.18 -171.80 -1.58 -35.36 16 10 C 0.02 1.12 4.43 29.85 0.13 1.25 16 11 C -0.54 -30.55 8.55 25.60 0.22 -30.34 16 12 H 0.07 3.67 7.15 -2.91 -0.02 3.65 16 13 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 14 N -0.93 -58.28 13.29 21.45 0.28 -58.00 16 15 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 19 N -0.51 -20.92 9.82 -172.09 -1.69 -22.61 16 20 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.10 1.76 8.08 -2.39 -0.02 1.74 16 23 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 24 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 25 H 0.15 4.07 7.95 -2.91 -0.02 4.05 16 26 H 0.35 13.93 7.90 -89.70 -0.71 13.22 16 27 H 0.33 14.16 8.93 -89.69 -0.80 13.35 16 28 H -0.01 -0.46 8.08 -2.38 -0.02 -0.48 16 29 H -0.02 -1.52 8.14 -2.39 -0.02 -1.54 16 30 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -70.51 261.78 1.55 -68.96 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.37 Total: 26.75 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 2.87 Total: -26.30 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -2.98 Total: -115.98 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.51 1.55 -68.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958895.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.857 kcal (2) G-P(sol) polarization free energy of solvation -70.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds