Wall clock time and date at job start Thu Apr 9 2020 14:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38289 * 119.97006 * 2 1 4 4 C 1.38239 * 120.11046 * 179.97438 * 3 2 1 5 5 C 1.38168 * 120.05906 * 359.96005 * 4 3 2 6 6 C 1.50697 * 120.03306 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47054 * 264.99758 * 6 5 4 8 8 H 1.07999 * 119.99897 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99844 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00476 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99809 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46945 * 90.00234 * 11 9 7 13 13 H 1.48502 * 109.47329 * 209.99958 * 11 9 7 14 14 H 1.48496 * 109.46977 * 330.00003 * 11 9 7 15 15 C 1.38721 * 119.93952 * 0.02562 * 5 4 3 16 16 O 1.35899 * 120.05437 * 180.02562 * 15 5 4 17 17 C 1.38115 * 119.97354 * 179.72278 * 2 1 3 18 18 C 1.50707 * 120.02680 * 359.97438 * 17 2 1 19 19 H 1.09002 * 109.47152 * 89.99988 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.00088 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.00069 * 1 2 3 22 22 H 1.07999 * 119.94812 * 359.97438 * 3 2 1 23 23 H 1.07997 * 119.97687 * 179.97438 * 4 3 2 24 24 H 1.08993 * 109.47137 * 24.99505 * 6 5 4 25 25 H 1.08997 * 109.47221 * 144.99978 * 6 5 4 26 26 H 0.96994 * 119.99975 * 179.97438 * 10 9 7 27 27 H 0.96706 * 114.00093 * 89.99419 * 16 15 5 28 28 H 1.09004 * 109.46777 * 90.00122 * 18 17 2 29 29 H 1.09002 * 109.47247 * 209.99967 * 18 17 2 30 30 H 1.08996 * 109.46890 * 330.00231 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2752 0.0072 0.0019 6 6 5.7822 0.0116 0.0031 7 6 6.2860 -0.1118 -1.4119 8 1 5.5850 -0.1856 -2.2302 9 6 7.6417 -0.1295 -1.6619 10 7 8.4954 -0.0392 -0.6655 11 14 8.2662 -0.2818 -3.4158 12 1 8.4273 1.0726 -4.0032 13 1 9.5767 -0.9803 -3.4159 14 1 7.2911 -1.0586 -4.2227 15 6 3.5846 -1.1958 0.0022 16 8 4.2658 -2.3717 0.0041 17 6 2.1971 -1.1964 0.0058 18 6 1.4435 -2.5016 0.0127 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 0.8900 0.5138 21 1 -0.3633 -0.8900 0.5139 22 1 1.6565 2.1325 -0.0004 23 1 4.1176 2.1382 0.0001 24 1 6.1425 0.9443 0.4369 25 1 6.1475 -0.8287 0.5934 26 1 9.4492 -0.0520 -0.8414 27 1 4.4620 -2.7112 0.8881 28 1 1.2615 -2.8214 -1.0134 29 1 2.0328 -3.2586 0.5301 30 1 0.4913 -2.3686 0.5262 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260008403.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:53 Heat of formation + Delta-G solvation = -61.234385 kcal Electronic energy + Delta-G solvation = -13100.415771 eV Core-core repulsion = 10859.089207 eV Total energy + Delta-G solvation = -2241.326563 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.92894 -37.63926 -35.87816 -34.20934 -31.99141 -30.45269 -27.88200 -26.91982 -24.42432 -22.71097 -21.06680 -18.75207 -18.53098 -17.11217 -16.76117 -16.13125 -15.70791 -14.87241 -14.44685 -14.26178 -13.93417 -13.81441 -13.52233 -13.23809 -13.09635 -12.76849 -12.58074 -12.35498 -12.23305 -12.13254 -11.76922 -11.47192 -10.94748 -10.61618 -9.35599 -9.14931 -8.21153 -6.33155 0.45845 0.54104 1.35192 1.37080 1.48811 2.37711 2.83037 3.08760 3.49139 4.02506 4.04693 4.24217 4.33937 4.54435 4.72762 4.82530 4.86847 4.94162 5.00460 5.07279 5.20130 5.26891 5.35146 5.48033 5.61177 5.73035 5.75694 5.97009 6.11929 6.20120 6.76528 7.00610 7.33833 8.87899 Molecular weight = 206.10amu Principal moments of inertia in cm(-1) A = 0.044108 B = 0.008709 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.652118 B = 3214.464395 C = 3383.180144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 C -0.124 4.124 4 C -0.130 4.130 5 C -0.104 4.104 6 C 0.068 3.932 7 C -0.519 4.519 8 H 0.042 0.958 9 C 0.004 3.996 10 N -0.931 5.931 11 Si 0.964 3.036 12 H -0.268 1.268 13 H -0.275 1.275 14 H -0.272 1.272 15 C 0.083 3.917 16 O -0.500 6.500 17 C -0.123 4.123 18 C -0.101 4.101 19 H 0.076 0.924 20 H 0.080 0.920 21 H 0.082 0.918 22 H 0.148 0.852 23 H 0.116 0.884 24 H 0.000 1.000 25 H 0.004 0.996 26 H 0.266 0.734 27 H 0.391 0.609 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.512 -1.403 2.476 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.098 4.098 3 C -0.142 4.142 4 C -0.148 4.148 5 C -0.105 4.105 6 C 0.031 3.969 7 C -0.557 4.557 8 H 0.061 0.939 9 C -0.194 4.194 10 N -0.571 5.571 11 Si 0.788 3.212 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.196 1.196 15 C 0.039 3.961 16 O -0.311 6.311 17 C -0.123 4.123 18 C -0.158 4.158 19 H 0.095 0.905 20 H 0.099 0.901 21 H 0.101 0.899 22 H 0.166 0.834 23 H 0.134 0.866 24 H 0.018 0.982 25 H 0.023 0.977 26 H 0.074 0.926 27 H 0.248 0.752 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.366 -1.355 1.911 15.543 hybrid contribution 1.295 -0.028 -0.219 1.314 sum -14.071 -1.384 1.691 14.239 Atomic orbital electron populations 1.20845 0.88179 1.04038 1.03094 1.19975 0.97831 0.91373 1.00661 1.21252 0.92896 0.98892 1.01122 1.21046 0.95092 0.96848 1.01799 1.20822 0.97381 0.93801 0.98458 1.17882 0.87392 0.95413 0.96176 1.21252 0.91708 1.49955 0.92758 0.93918 1.25881 0.96976 0.94763 1.01750 1.70065 1.02494 1.51546 1.32985 0.85471 0.77699 0.78658 0.79381 1.19375 1.20055 1.19644 1.18385 0.89963 0.84800 1.02964 1.84831 1.76772 1.35858 1.33632 1.20335 0.91870 0.97576 1.02550 1.20708 1.00026 0.92421 1.02607 0.90517 0.90133 0.89894 0.83385 0.86615 0.98167 0.97734 0.92566 0.75246 0.91352 0.91679 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 9.61 71.24 0.68 -1.32 16 2 C -0.10 -2.89 5.88 -19.88 -0.12 -3.01 16 3 C -0.12 -3.95 9.70 22.28 0.22 -3.73 16 4 C -0.13 -5.26 9.68 22.25 0.22 -5.05 16 5 C -0.10 -4.90 5.08 -19.77 -0.10 -5.00 16 6 C 0.07 3.86 4.83 29.10 0.14 4.00 16 7 C -0.52 -31.60 9.09 25.60 0.23 -31.37 16 8 H 0.04 2.63 7.74 -2.91 -0.02 2.61 16 9 C 0.00 0.24 5.46 84.65 0.46 0.70 16 10 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 11 Si 0.96 46.55 29.54 68.60 2.03 48.57 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 15 C 0.08 3.50 6.65 22.51 0.15 3.65 16 16 O -0.50 -20.83 11.69 -92.42 -1.08 -21.91 16 17 C -0.12 -4.09 5.89 -19.77 -0.12 -4.21 16 18 C -0.10 -2.52 9.38 71.24 0.67 -1.85 16 19 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 20 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 21 H 0.08 1.31 5.93 -2.38 -0.01 1.29 16 22 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 23 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 24 H 0.00 0.00 8.05 -2.39 -0.02 -0.02 16 25 H 0.00 0.26 7.69 -2.39 -0.02 0.25 16 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.39 12.59 9.06 -74.05 -0.67 11.92 16 28 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.06 1.58 7.54 -2.39 -0.02 1.57 16 30 H 0.09 1.72 5.94 -2.39 -0.01 1.71 16 Total: -1.00 -71.88 257.83 4.13 -67.74 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.47 Total: 10.43 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 2.44 Total: -47.20 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.28 Total: -57.64 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -1.08 Total: -21.91 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -71.88 4.13 -67.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260008403.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.509 kcal (2) G-P(sol) polarization free energy of solvation -71.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds