Wall clock time and date at job start Thu Apr 9 2020 14:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38229 * 119.61447 * 2 1 4 4 C 1.38629 * 119.15520 * 179.74352 * 3 2 1 5 5 C 1.38669 * 118.42152 * 0.47453 * 4 3 2 6 6 C 1.50703 * 120.41814 * 179.78130 * 5 4 3 7 7 C 1.38184 * 119.16535 * 359.50079 * 5 4 3 8 8 C 1.50695 * 119.61820 * 180.25305 * 7 5 4 9 9 H 1.08997 * 109.47173 * 345.00516 * 8 7 5 10 10 N 1.46895 * 109.47265 * 224.99952 * 8 7 5 11 11 C 1.50708 * 109.46879 * 105.00341 * 8 7 5 12 12 H 1.07997 * 119.99875 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99796 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00019 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99746 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.47050 * 60.00464 * 15 13 11 17 17 H 1.48497 * 109.47312 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47640 * 300.00220 * 15 13 11 19 19 N 1.31848 * 119.61567 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.47056 * 270.02465 * 1 2 3 21 21 H 1.08996 * 109.47113 * 30.02629 * 1 2 3 22 22 H 1.09005 * 109.46684 * 150.02376 * 1 2 3 23 23 H 1.08000 * 120.42270 * 359.95011 * 3 2 1 24 24 H 1.08001 * 120.78653 * 180.22637 * 4 3 2 25 25 H 1.09002 * 109.47152 * 269.71734 * 6 5 4 26 26 H 1.09001 * 109.46980 * 149.71835 * 6 5 4 27 27 H 1.09004 * 109.47113 * 29.71815 * 6 5 4 28 28 H 1.00900 * 111.00298 * 300.00427 * 10 8 7 29 29 H 1.00902 * 110.99844 * 63.96070 * 10 8 7 30 30 H 0.97007 * 119.99650 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5764 1.1906 0.0054 5 6 4.2266 -0.0342 0.0006 6 6 5.7323 -0.0987 0.0012 7 6 3.4767 -1.1948 0.0011 8 6 4.1728 -2.5313 0.0016 9 1 5.2210 -2.3951 -0.2644 10 7 3.5304 -3.4184 -0.9773 11 6 4.0786 -3.1462 1.3743 12 1 3.5656 -2.6217 2.1668 13 6 4.6464 -4.3787 1.6180 14 7 5.2707 -5.0175 0.6528 15 14 4.5303 -5.1404 3.3197 16 1 3.1023 -5.3253 3.6829 17 1 5.2161 -6.4576 3.3203 18 1 5.1806 -4.2439 4.3089 19 7 2.1587 -1.1462 0.0005 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3633 -0.8903 -0.5135 23 1 1.6508 2.1374 -0.0008 24 1 4.1366 2.1140 0.0092 25 1 6.0957 -0.1149 -1.0264 26 1 6.0570 -1.0031 0.5157 27 1 6.1332 0.7753 0.5146 28 1 2.5570 -3.5604 -0.7525 29 1 3.6365 -3.0598 -1.9145 30 1 5.6699 -5.8849 0.8242 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260018989.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:54 Heat of formation + Delta-G solvation = 24.854187 kcal Electronic energy + Delta-G solvation = -13286.717123 eV Core-core repulsion = 11081.416392 eV Total energy + Delta-G solvation = -2205.300732 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.79127 -34.86941 -33.33413 -31.82765 -30.32191 -29.13035 -26.17392 -24.80810 -23.35374 -21.02344 -20.06382 -16.54550 -15.76277 -15.41034 -14.62793 -14.11418 -13.97418 -13.90161 -12.93946 -12.71740 -12.52839 -12.29030 -12.01920 -11.79770 -11.57705 -11.41830 -10.86567 -10.68189 -10.57595 -9.90021 -9.27450 -8.99094 -8.72252 -8.37190 -7.90538 -6.96882 -5.83446 -3.96703 1.73701 1.90817 3.38843 3.42939 3.46561 4.36129 4.56617 4.87360 5.14477 5.42060 5.44124 5.45133 5.66312 5.81758 5.85763 5.90475 6.06067 6.14641 6.28022 6.42323 6.57375 6.61371 6.72038 6.90520 7.37943 7.46407 7.95783 8.20145 8.66359 8.85746 9.13320 9.21188 9.70101 11.21091 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.034204 B = 0.010552 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.423328 B = 2652.880706 C = 2903.991688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.111 3.889 3 C -0.199 4.199 4 C -0.082 4.082 5 C -0.148 4.148 6 C -0.109 4.109 7 C 0.139 3.861 8 C 0.264 3.736 9 H 0.059 0.941 10 N -0.803 5.803 11 C -0.522 4.522 12 H 0.050 0.950 13 C 0.084 3.916 14 N -0.848 5.848 15 Si 0.886 3.114 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.279 1.279 19 N -0.475 5.475 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.120 0.880 24 H 0.122 0.878 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.328 0.672 29 H 0.293 0.707 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.676 10.676 -2.036 11.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.027 4.027 3 C -0.220 4.220 4 C -0.108 4.108 5 C -0.151 4.151 6 C -0.166 4.166 7 C -0.001 4.001 8 C 0.153 3.847 9 H 0.077 0.923 10 N -0.327 5.327 11 C -0.561 4.561 12 H 0.068 0.932 13 C -0.123 4.123 14 N -0.483 5.483 15 Si 0.713 3.287 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.205 1.205 19 N -0.184 5.184 20 H 0.089 0.911 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.138 0.862 24 H 0.140 0.860 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.141 0.859 29 H 0.102 0.898 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.517 9.143 -1.853 9.970 hybrid contribution -0.297 1.379 0.822 1.633 sum -3.814 10.522 -1.031 11.239 Atomic orbital electron populations 1.20617 0.89853 1.02564 1.02442 1.21256 0.96601 0.88878 0.95943 1.21673 0.94794 0.98593 1.06897 1.21354 0.94270 0.97459 0.97734 1.20847 0.97741 0.93612 1.02863 1.20755 0.90587 1.03426 1.01870 1.23467 0.88937 0.98889 0.88811 1.18352 0.92739 0.80249 0.93335 0.92326 1.59237 1.19853 1.51457 1.02185 1.20668 1.37667 1.04176 0.93627 0.93208 1.24903 0.94616 0.96699 0.96043 1.70087 1.33753 1.13645 1.30805 0.86800 0.78242 0.78431 0.85205 1.20349 1.21310 1.20465 1.67391 1.10161 1.28216 1.12664 0.91056 0.91607 0.90828 0.86164 0.86019 0.91828 0.89293 0.92529 0.85910 0.89779 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.17 36.01 0.37 -0.99 16 2 C 0.11 2.02 6.78 -82.58 -0.56 1.46 16 3 C -0.20 -3.22 9.74 -39.44 -0.38 -3.61 16 4 C -0.08 -1.37 9.86 -39.28 -0.39 -1.76 16 5 C -0.15 -2.88 5.90 -104.48 -0.62 -3.49 16 6 C -0.11 -1.87 9.25 36.01 0.33 -1.54 16 7 C 0.14 3.14 5.65 -82.59 -0.47 2.67 16 8 C 0.26 6.68 2.50 -70.02 -0.18 6.50 16 9 H 0.06 1.54 5.91 -51.93 -0.31 1.24 16 10 N -0.80 -19.92 8.49 -6.65 -0.06 -19.97 16 11 C -0.52 -14.71 8.71 -34.44 -0.30 -15.01 16 12 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 13 C 0.08 2.37 5.39 -17.82 -0.10 2.28 16 14 N -0.85 -24.75 12.77 55.43 0.71 -24.04 16 15 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 N -0.47 -10.36 9.61 -5.74 -0.06 -10.41 16 20 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 22 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 24 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.09 1.74 6.41 -51.93 -0.33 1.40 16 27 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 28 H 0.33 8.20 8.53 -39.29 -0.34 7.87 16 29 H 0.29 6.57 9.06 -39.29 -0.36 6.21 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 258.36 15.07 3.89 3.89 Total: -1.00 -30.71 258.36 -6.64 -37.36 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -3.83 Total: 9.92 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -2.29 Total: -13.49 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.60 Total: -54.43 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.71 -6.64 -37.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260018989.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.212 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds