Wall clock time and date at job start Thu Apr 9 2020 14:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38229 * 119.61447 * 2 1 4 4 C 1.38629 * 119.15520 * 179.74352 * 3 2 1 5 5 C 1.38669 * 118.42152 * 0.47453 * 4 3 2 6 6 C 1.50703 * 120.41814 * 179.78130 * 5 4 3 7 7 C 1.38184 * 119.16535 * 359.50079 * 5 4 3 8 8 C 1.50695 * 119.61820 * 180.25305 * 7 5 4 9 9 H 1.08997 * 109.47173 * 345.00516 * 8 7 5 10 10 N 1.46895 * 109.47265 * 224.99952 * 8 7 5 11 11 C 1.50708 * 109.46879 * 105.00341 * 8 7 5 12 12 H 1.07997 * 119.99875 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99796 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00019 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99746 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.47050 * 60.00464 * 15 13 11 17 17 H 1.48497 * 109.47312 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47640 * 300.00220 * 15 13 11 19 19 N 1.31848 * 119.61567 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.47056 * 270.02465 * 1 2 3 21 21 H 1.08996 * 109.47113 * 30.02629 * 1 2 3 22 22 H 1.09005 * 109.46684 * 150.02376 * 1 2 3 23 23 H 1.08000 * 120.42270 * 359.95011 * 3 2 1 24 24 H 1.08001 * 120.78653 * 180.22637 * 4 3 2 25 25 H 1.09002 * 109.47152 * 269.71734 * 6 5 4 26 26 H 1.09001 * 109.46980 * 149.71835 * 6 5 4 27 27 H 1.09004 * 109.47113 * 29.71815 * 6 5 4 28 28 H 1.00900 * 111.00298 * 300.00427 * 10 8 7 29 29 H 1.00902 * 110.99844 * 63.96070 * 10 8 7 30 30 H 0.97007 * 119.99650 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5764 1.1906 0.0054 5 6 4.2266 -0.0342 0.0006 6 6 5.7323 -0.0987 0.0012 7 6 3.4767 -1.1948 0.0011 8 6 4.1728 -2.5313 0.0016 9 1 5.2210 -2.3951 -0.2644 10 7 3.5304 -3.4184 -0.9773 11 6 4.0786 -3.1462 1.3743 12 1 3.5656 -2.6217 2.1668 13 6 4.6464 -4.3787 1.6180 14 7 5.2707 -5.0175 0.6528 15 14 4.5303 -5.1404 3.3197 16 1 3.1023 -5.3253 3.6829 17 1 5.2161 -6.4576 3.3203 18 1 5.1806 -4.2439 4.3089 19 7 2.1587 -1.1462 0.0005 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3633 -0.8903 -0.5135 23 1 1.6508 2.1374 -0.0008 24 1 4.1366 2.1140 0.0092 25 1 6.0957 -0.1149 -1.0264 26 1 6.0570 -1.0031 0.5157 27 1 6.1332 0.7753 0.5146 28 1 2.5570 -3.5604 -0.7525 29 1 3.6365 -3.0598 -1.9145 30 1 5.6699 -5.8849 0.8242 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260018989.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:54 Heat of formation + Delta-G solvation = 3.141654 kcal Electronic energy + Delta-G solvation = -13287.658649 eV Core-core repulsion = 11081.416392 eV Total energy + Delta-G solvation = -2206.242258 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.23390 -36.64350 -34.80780 -33.74295 -31.99972 -30.38450 -28.18074 -26.30149 -24.95289 -22.51917 -21.69021 -18.57010 -17.35855 -16.94660 -16.35613 -15.87992 -15.58950 -15.41701 -14.40826 -14.22741 -14.04401 -13.80493 -13.53139 -13.09750 -12.99165 -12.91562 -12.73797 -12.58474 -12.34321 -11.77251 -11.23833 -10.55028 -10.49085 -10.20149 -9.39222 -8.85910 -7.98458 -6.18410 0.32673 0.53069 1.40874 1.42785 1.50124 2.45459 2.96739 3.24431 3.54454 3.95513 4.07039 4.21058 4.26277 4.51995 4.59276 4.75695 4.78073 4.80380 4.83789 5.07066 5.13783 5.22289 5.33190 5.44101 5.60109 5.73308 5.99565 6.17189 6.62050 7.07775 7.22797 7.39337 7.51588 9.04898 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.034204 B = 0.010552 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.423328 B = 2652.880706 C = 2903.991688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.091 3.909 3 C -0.185 4.185 4 C -0.077 4.077 5 C -0.165 4.165 6 C -0.103 4.103 7 C 0.103 3.897 8 C 0.267 3.733 9 H 0.039 0.961 10 N -0.811 5.811 11 C -0.535 4.535 12 H 0.031 0.969 13 C 0.038 3.962 14 N -0.877 5.877 15 Si 0.946 3.054 16 H -0.280 1.280 17 H -0.279 1.279 18 H -0.272 1.272 19 N -0.509 5.509 20 H 0.079 0.921 21 H 0.101 0.899 22 H 0.063 0.937 23 H 0.166 0.834 24 H 0.163 0.837 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.324 0.676 29 H 0.304 0.696 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.431 13.011 -1.659 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C -0.205 4.205 4 C -0.103 4.103 5 C -0.167 4.167 6 C -0.161 4.161 7 C -0.036 4.036 8 C 0.157 3.843 9 H 0.057 0.943 10 N -0.336 5.336 11 C -0.574 4.574 12 H 0.049 0.951 13 C -0.166 4.166 14 N -0.512 5.512 15 Si 0.772 3.228 16 H -0.205 1.205 17 H -0.204 1.204 18 H -0.197 1.197 19 N -0.220 5.220 20 H 0.097 0.903 21 H 0.120 0.880 22 H 0.082 0.918 23 H 0.183 0.817 24 H 0.181 0.819 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.136 0.864 29 H 0.114 0.886 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.263 11.485 -1.475 12.339 hybrid contribution -0.129 0.771 0.672 1.031 sum -4.392 12.256 -0.803 13.044 Atomic orbital electron populations 1.20708 0.87141 1.03893 1.03322 1.21992 0.98540 0.88727 0.95492 1.22183 0.94866 0.99559 1.03885 1.21806 0.94900 0.97667 0.95890 1.21072 0.98590 0.93966 1.03098 1.20707 0.89705 1.03077 1.02567 1.22911 0.89778 0.98415 0.92501 1.17998 0.92213 0.82208 0.91925 0.94294 1.59127 1.19361 1.52272 1.02881 1.20872 1.37236 1.04513 0.94775 0.95053 1.25601 0.94347 0.97140 0.99528 1.70197 1.34578 1.13891 1.32574 0.85839 0.77995 0.77871 0.81100 1.20534 1.20445 1.19722 1.67259 1.10113 1.30761 1.13845 0.90261 0.87993 0.91819 0.81698 0.81925 0.90664 0.92767 0.89405 0.86414 0.88620 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.36 10.17 71.24 0.72 -1.64 16 2 C 0.09 3.11 6.78 42.56 0.29 3.40 16 3 C -0.19 -5.24 9.74 22.36 0.22 -5.03 16 4 C -0.08 -2.29 9.86 22.47 0.22 -2.07 16 5 C -0.16 -6.24 5.90 -19.77 -0.12 -6.36 16 6 C -0.10 -3.48 9.25 71.24 0.66 -2.82 16 7 C 0.10 4.71 5.65 42.54 0.24 4.96 16 8 C 0.27 14.05 2.50 43.42 0.11 14.16 16 9 H 0.04 2.17 5.91 -2.39 -0.01 2.16 16 10 N -0.81 -41.79 8.49 -174.96 -1.48 -43.27 16 11 C -0.53 -31.15 8.71 25.60 0.22 -30.93 16 12 H 0.03 1.89 7.74 -2.91 -0.02 1.86 16 13 C 0.04 2.17 5.39 84.66 0.46 2.63 16 14 N -0.88 -52.41 12.77 21.45 0.27 -52.13 16 15 Si 0.95 45.48 29.54 68.60 2.03 47.51 16 16 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 18 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 19 N -0.51 -22.30 9.61 -172.07 -1.65 -23.95 16 20 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.10 1.81 8.08 -2.39 -0.02 1.79 16 22 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 24 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 25 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 26 H 0.05 2.19 6.41 -2.39 -0.02 2.17 16 27 H 0.09 2.33 8.09 -2.38 -0.02 2.31 16 28 H 0.32 16.85 8.53 -89.69 -0.77 16.09 16 29 H 0.30 14.15 9.06 -89.69 -0.81 13.34 16 30 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -68.23 258.36 1.76 -66.47 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.42 Total: 29.08 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 3.02 Total: -23.71 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -2.86 Total: -119.35 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -68.23 1.76 -66.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260018989.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.612 kcal (2) G-P(sol) polarization free energy of solvation -68.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds