Wall clock time and date at job start Thu Apr 9 2020 14:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47172 * 2 1 4 4 C 1.38171 * 119.96866 * 269.97931 * 3 2 1 5 5 C 1.38709 * 119.94081 * 180.02562 * 4 3 2 6 6 O 1.35901 * 120.05787 * 179.97438 * 5 4 3 7 7 C 1.38759 * 119.88974 * 359.97438 * 5 4 3 8 8 C 1.38120 * 119.94381 * 0.02562 * 7 5 4 9 9 C 1.50699 * 119.97500 * 180.02562 * 8 7 5 10 10 C 1.50704 * 109.47102 * 270.02358 * 9 8 7 11 11 H 1.07999 * 120.00070 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00136 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99705 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 119.99866 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47587 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47014 * 119.99972 * 14 12 10 17 17 H 1.48508 * 109.47104 * 239.99376 * 14 12 10 18 18 C 1.38240 * 119.97069 * 90.00167 * 3 2 1 19 19 H 1.08998 * 109.46635 * 299.99965 * 1 2 3 20 20 H 1.08993 * 109.47225 * 59.99920 * 1 2 3 21 21 H 1.09005 * 109.47093 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47073 * 239.99879 * 2 1 3 23 23 H 1.09006 * 109.47514 * 119.99971 * 2 1 3 24 24 H 1.07998 * 120.03208 * 0.03795 * 4 3 2 25 25 H 0.96697 * 114.00182 * 270.02723 * 6 5 4 26 26 H 1.08001 * 120.02997 * 180.02562 * 7 5 4 27 27 H 1.09002 * 109.47009 * 30.01701 * 9 8 7 28 28 H 1.09001 * 109.47211 * 150.01789 * 9 8 7 29 29 H 0.97000 * 119.99762 * 179.97438 * 13 12 10 30 30 H 1.07995 * 119.94494 * 0.25197 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0714 -1.1970 5 6 2.7257 3.3790 -1.1963 6 8 2.9537 4.0210 -2.3722 7 6 2.9556 4.0305 0.0071 8 6 2.7237 3.3757 1.2009 9 6 2.9725 4.0828 2.5082 10 6 4.3954 3.8459 2.9445 11 1 5.0536 3.2432 2.3362 12 6 4.8568 4.3977 4.1208 13 7 4.0552 5.1313 4.8618 14 14 6.6203 4.1034 4.6619 15 1 7.3096 3.2506 3.6606 16 1 7.3270 5.4046 4.7751 17 1 6.6260 3.4208 5.9808 18 6 2.2626 2.0719 1.1975 19 1 -0.3632 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.0826 1.5624 -2.1323 25 1 3.8523 3.9116 -2.7123 26 1 3.3156 5.0487 0.0102 27 1 2.8051 5.1523 2.3804 28 1 2.2909 3.6963 3.2659 29 1 4.3797 5.5192 5.6895 30 1 2.0861 1.5601 2.1320 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260118640.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:02 Heat of formation + Delta-G solvation = -46.576992 kcal Electronic energy + Delta-G solvation = -12792.305269 eV Core-core repulsion = 10551.614297 eV Total energy + Delta-G solvation = -2240.690971 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.31677 -36.66367 -34.28180 -32.66352 -30.49954 -28.60915 -27.04793 -23.69311 -23.27449 -21.29181 -19.63257 -17.33898 -16.31104 -15.68842 -15.47952 -14.72963 -14.39457 -13.89204 -13.54252 -12.68142 -12.55566 -12.26130 -11.83859 -11.51200 -11.39645 -11.15532 -10.97764 -10.83441 -10.59020 -10.43356 -10.21227 -9.46645 -9.41932 -8.45707 -8.00262 -7.82788 -6.07276 -4.11282 1.86118 2.01196 3.27238 3.34903 3.39599 4.19815 4.44271 4.66987 5.10862 5.22514 5.27990 5.54062 5.54964 5.75267 5.87609 5.89730 6.04999 6.07696 6.31052 6.34733 6.45641 6.70885 7.00550 7.08402 7.14871 7.42625 7.54946 7.79878 7.88563 8.08653 8.28200 8.94002 9.52653 11.02797 Molecular weight = 206.10amu Principal moments of inertia in cm(-1) A = 0.032716 B = 0.008397 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.655897 B = 3333.625511 C = 3758.739734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.074 4.074 4 C -0.171 4.171 5 C 0.097 3.903 6 O -0.505 6.505 7 C -0.151 4.151 8 C -0.016 4.016 9 C 0.047 3.953 10 C -0.512 4.512 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.895 3.105 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.128 4.128 19 H 0.057 0.943 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.114 0.886 25 H 0.383 0.617 26 H 0.123 0.877 27 H 0.030 0.970 28 H 0.031 0.969 29 H 0.262 0.738 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 -7.238 -9.633 12.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.074 4.074 4 C -0.190 4.190 5 C 0.053 3.947 6 O -0.315 6.315 7 C -0.170 4.170 8 C -0.016 4.016 9 C 0.010 3.990 10 C -0.550 4.550 11 H 0.076 0.924 12 C -0.144 4.144 13 N -0.532 5.532 14 Si 0.723 3.277 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.146 4.146 19 H 0.076 0.924 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.133 0.867 25 H 0.237 0.763 26 H 0.141 0.859 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.740 -6.965 -9.410 12.290 hybrid contribution 1.522 -0.148 0.285 1.555 sum -2.218 -7.114 -9.125 11.781 Atomic orbital electron populations 1.21741 0.95097 1.01136 1.02300 1.20489 0.95912 0.93075 1.02361 1.19659 0.99207 0.95698 0.92855 1.20947 1.06175 0.94245 0.97592 1.18458 1.00640 0.90749 0.84842 1.84782 1.35487 1.74281 1.36913 1.21340 1.03277 1.01035 0.91314 1.20570 0.90757 0.93520 0.96771 1.18387 0.97429 0.95462 0.87746 1.21080 0.95862 1.31846 1.06215 0.92407 1.25018 0.97815 0.95059 0.96462 1.69969 1.35501 1.33664 1.14090 0.86474 0.84604 0.78040 0.78576 1.19675 1.20896 1.20895 1.20993 1.01563 0.95054 0.96994 0.92367 0.92768 0.92829 0.91613 0.91061 0.86749 0.76292 0.85933 0.95197 0.95107 0.92844 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.89 37.16 0.37 -1.36 16 2 C -0.08 -1.07 6.06 -27.88 -0.17 -1.24 16 3 C -0.07 -1.25 5.13 -104.65 -0.54 -1.79 16 4 C -0.17 -2.86 9.64 -39.43 -0.38 -3.24 16 5 C 0.10 1.75 6.71 -39.21 -0.26 1.49 16 6 O -0.51 -7.93 13.50 -19.43 -0.26 -8.20 16 7 C -0.15 -3.10 9.64 -39.43 -0.38 -3.48 16 8 C -0.02 -0.35 5.07 -104.64 -0.53 -0.88 16 9 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 10 C -0.51 -14.33 9.09 -34.44 -0.31 -14.64 16 11 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 14 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C -0.13 -2.52 9.35 -39.56 -0.37 -2.89 16 19 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 23 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 24 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 25 H 0.38 4.12 9.06 45.56 0.41 4.53 16 26 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 27 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 28 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 30 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 264.85 15.07 3.99 3.99 Total: -1.00 -30.63 264.85 -6.72 -37.35 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -3.34 Total: 1.49 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: -2.82 Total: -25.43 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.74 Total: -25.63 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.26 Total: -8.20 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.63 -6.72 -37.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118640.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.229 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds