Wall clock time and date at job start Thu Apr 9 2020 14:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47172 * 2 1 4 4 C 1.38171 * 119.96866 * 269.97931 * 3 2 1 5 5 C 1.38709 * 119.94081 * 180.02562 * 4 3 2 6 6 O 1.35901 * 120.05787 * 179.97438 * 5 4 3 7 7 C 1.38759 * 119.88974 * 359.97438 * 5 4 3 8 8 C 1.38120 * 119.94381 * 0.02562 * 7 5 4 9 9 C 1.50699 * 119.97500 * 180.02562 * 8 7 5 10 10 C 1.50704 * 109.47102 * 270.02358 * 9 8 7 11 11 H 1.07999 * 120.00070 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00136 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99705 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 119.99866 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47587 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47014 * 119.99972 * 14 12 10 17 17 H 1.48508 * 109.47104 * 239.99376 * 14 12 10 18 18 C 1.38240 * 119.97069 * 90.00167 * 3 2 1 19 19 H 1.08998 * 109.46635 * 299.99965 * 1 2 3 20 20 H 1.08993 * 109.47225 * 59.99920 * 1 2 3 21 21 H 1.09005 * 109.47093 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47073 * 239.99879 * 2 1 3 23 23 H 1.09006 * 109.47514 * 119.99971 * 2 1 3 24 24 H 1.07998 * 120.03208 * 0.03795 * 4 3 2 25 25 H 0.96697 * 114.00182 * 270.02723 * 6 5 4 26 26 H 1.08001 * 120.02997 * 180.02562 * 7 5 4 27 27 H 1.09002 * 109.47009 * 30.01701 * 9 8 7 28 28 H 1.09001 * 109.47211 * 150.01789 * 9 8 7 29 29 H 0.97000 * 119.99762 * 179.97438 * 13 12 10 30 30 H 1.07995 * 119.94494 * 0.25197 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0714 -1.1970 5 6 2.7257 3.3790 -1.1963 6 8 2.9537 4.0210 -2.3722 7 6 2.9556 4.0305 0.0071 8 6 2.7237 3.3757 1.2009 9 6 2.9725 4.0828 2.5082 10 6 4.3954 3.8459 2.9445 11 1 5.0536 3.2432 2.3362 12 6 4.8568 4.3977 4.1208 13 7 4.0552 5.1313 4.8618 14 14 6.6203 4.1034 4.6619 15 1 7.3096 3.2506 3.6606 16 1 7.3270 5.4046 4.7751 17 1 6.6260 3.4208 5.9808 18 6 2.2626 2.0719 1.1975 19 1 -0.3632 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.0826 1.5624 -2.1323 25 1 3.8523 3.9116 -2.7123 26 1 3.3156 5.0487 0.0102 27 1 2.8051 5.1523 2.3804 28 1 2.2909 3.6963 3.2659 29 1 4.3797 5.5192 5.6895 30 1 2.0861 1.5601 2.1320 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260118640.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:01 Heat of formation + Delta-G solvation = -65.892112 kcal Electronic energy + Delta-G solvation = -12793.142835 eV Core-core repulsion = 10551.614297 eV Total energy + Delta-G solvation = -2241.528538 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.105 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.75077 -37.99683 -35.91828 -34.44454 -32.09706 -29.95229 -28.92004 -25.38896 -24.73125 -22.72834 -21.11157 -18.74337 -18.45341 -17.15965 -16.89193 -16.56717 -15.87529 -15.06859 -14.62606 -14.50863 -14.18918 -13.73534 -13.55693 -13.08993 -12.91494 -12.64629 -12.57777 -12.37073 -12.12956 -11.98025 -11.67977 -11.48665 -11.06912 -10.64200 -9.47018 -9.38660 -8.23427 -6.37102 0.40621 0.52360 1.38548 1.38657 1.52484 2.37267 2.79812 3.07588 3.35008 3.89465 4.05447 4.28456 4.40120 4.44399 4.57118 4.70690 4.71295 4.97255 5.07889 5.13327 5.20058 5.31486 5.32290 5.42834 5.52281 5.67462 5.72811 5.98537 6.01923 6.16251 6.75309 6.90269 7.31718 8.86716 Molecular weight = 206.10amu Principal moments of inertia in cm(-1) A = 0.032716 B = 0.008397 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.655897 B = 3333.625511 C = 3758.739734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.062 4.062 4 C -0.162 4.162 5 C 0.108 3.892 6 O -0.507 6.507 7 C -0.173 4.173 8 C -0.043 4.043 9 C 0.055 3.945 10 C -0.529 4.529 11 H 0.056 0.944 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.968 3.032 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.275 1.275 18 C -0.143 4.143 19 H 0.043 0.957 20 H 0.056 0.944 21 H 0.078 0.922 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.150 0.850 25 H 0.407 0.593 26 H 0.110 0.890 27 H 0.001 0.999 28 H 0.006 0.994 29 H 0.266 0.734 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 -9.173 -11.408 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.062 4.062 4 C -0.180 4.180 5 C 0.064 3.936 6 O -0.320 6.320 7 C -0.192 4.192 8 C -0.043 4.043 9 C 0.019 3.981 10 C -0.567 4.567 11 H 0.074 0.926 12 C -0.195 4.195 13 N -0.570 5.570 14 Si 0.792 3.208 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.200 1.200 18 C -0.161 4.161 19 H 0.062 0.938 20 H 0.075 0.925 21 H 0.097 0.903 22 H 0.110 0.890 23 H 0.093 0.907 24 H 0.168 0.832 25 H 0.266 0.734 26 H 0.128 0.872 27 H 0.019 0.981 28 H 0.024 0.976 29 H 0.075 0.925 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.141 -8.903 -11.207 14.654 hybrid contribution 1.286 0.453 0.739 1.551 sum -1.855 -8.451 -10.468 13.581 Atomic orbital electron populations 1.21731 0.93933 1.02668 1.01740 1.20596 0.96777 0.90505 1.03859 1.20038 0.97181 0.97382 0.91641 1.21319 1.04319 0.93510 0.98873 1.18428 0.99578 0.91064 0.84560 1.84719 1.37569 1.74170 1.35493 1.21296 1.04868 1.00887 0.92158 1.20250 0.93834 0.94837 0.95403 1.18123 0.96345 0.94037 0.89637 1.21380 0.96820 1.31895 1.06584 0.92615 1.25967 1.02544 0.94559 0.96410 1.70093 1.37757 1.34565 1.14625 0.85347 0.78836 0.78247 0.78330 1.18798 1.20132 1.20000 1.21016 1.02444 0.94298 0.98379 0.93805 0.92508 0.90297 0.88993 0.90743 0.83213 0.73430 0.87188 0.98099 0.97556 0.92483 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.89 71.98 0.71 -2.24 16 2 C -0.08 -1.85 6.06 29.85 0.18 -1.67 16 3 C -0.06 -1.97 5.13 -19.88 -0.10 -2.07 16 4 C -0.16 -4.89 9.64 22.37 0.22 -4.67 16 5 C 0.11 3.71 6.71 22.51 0.15 3.86 16 6 O -0.51 -14.57 13.50 -92.44 -1.25 -15.82 16 7 C -0.17 -7.25 9.64 22.37 0.22 -7.04 16 8 C -0.04 -1.98 5.07 -19.88 -0.10 -2.08 16 9 C 0.06 3.06 5.10 29.10 0.15 3.21 16 10 C -0.53 -30.67 9.09 25.60 0.23 -30.44 16 11 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 12 C 0.00 0.19 5.46 84.65 0.46 0.65 16 13 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 14 Si 0.97 44.41 29.54 68.60 2.03 46.43 16 15 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 C -0.14 -5.69 9.35 22.28 0.21 -5.48 16 19 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 20 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 22 H 0.09 1.69 8.08 -2.39 -0.02 1.67 16 23 H 0.07 1.69 8.09 -2.38 -0.02 1.67 16 24 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 25 H 0.41 7.49 9.06 -74.06 -0.67 6.82 16 26 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 27 H 0.00 0.04 8.08 -2.39 -0.02 0.02 16 28 H 0.01 0.36 8.08 -2.39 -0.02 0.34 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -67.43 264.85 3.84 -63.59 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.45 Total: 10.10 kcal Atomic # 6 Polarization: -50.28 SS G_CDS: 2.32 Total: -47.96 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.28 Total: -56.35 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -1.25 Total: -15.82 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.43 3.84 -63.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118640.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.298 kcal (2) G-P(sol) polarization free energy of solvation -67.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds