Wall clock time and date at job start Thu Apr 9 2020 14:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38677 * 120.41881 * 2 1 4 4 C 1.38628 * 118.41857 * 179.97438 * 3 2 1 5 5 C 1.38215 * 119.16579 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.62025 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.46971 * 5.02307 * 6 5 4 8 8 N 1.46901 * 109.47289 * 245.02122 * 6 5 4 9 9 C 1.50709 * 109.47233 * 125.02102 * 6 5 4 10 10 H 1.07999 * 119.99734 * 359.97438 * 9 6 5 11 11 C 1.37876 * 119.99918 * 180.02562 * 9 6 5 12 12 N 1.31517 * 119.99966 * 0.02562 * 11 9 6 13 13 Si 1.86801 * 119.99672 * 179.97438 * 11 9 6 14 14 H 1.48491 * 109.47371 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.46824 * 120.00247 * 13 11 9 16 16 H 1.48507 * 109.47080 * 239.99827 * 13 11 9 17 17 N 1.31854 * 120.76332 * 359.97438 * 5 4 3 18 18 C 1.31888 * 121.72838 * 0.02562 * 17 5 4 19 19 C 1.50694 * 119.61911 * 179.97438 * 18 17 5 20 20 H 1.08996 * 109.47087 * 89.99893 * 1 2 3 21 21 H 1.09008 * 109.46574 * 210.00166 * 1 2 3 22 22 H 1.08994 * 109.46982 * 329.99952 * 1 2 3 23 23 H 1.08003 * 120.78604 * 359.96123 * 3 2 1 24 24 H 1.08004 * 120.41395 * 180.02562 * 4 3 2 25 25 H 1.00903 * 110.99942 * 176.04804 * 8 6 5 26 26 H 1.00903 * 110.99665 * 299.99553 * 8 6 5 27 27 H 0.97002 * 119.99466 * 180.02562 * 12 11 9 28 28 H 1.08999 * 109.47373 * 90.00588 * 19 18 17 29 29 H 1.09011 * 109.46908 * 210.00177 * 19 18 17 30 30 H 1.09003 * 109.47334 * 329.99700 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1959 0.0000 4 6 3.5946 1.1475 0.0005 5 6 4.2256 -0.0822 0.0005 6 6 5.7312 -0.1467 0.0005 7 1 6.1380 0.8605 0.0905 8 7 6.1954 -0.7520 -1.2549 9 6 6.1982 -0.9829 1.1641 10 1 5.4769 -1.4232 1.8366 11 6 7.5464 -1.1850 1.3707 12 7 8.4248 -0.6476 0.5527 13 14 8.1252 -2.2209 2.8135 14 1 6.9484 -2.7061 3.5781 15 1 8.9016 -3.3819 2.3092 16 1 8.9859 -1.3974 3.7003 17 7 3.5255 -1.1995 0.0005 18 6 2.2067 -1.1916 0.0000 19 6 1.4541 -2.4972 -0.0006 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5139 22 1 -0.3633 0.8899 0.5138 23 1 1.6889 2.1424 -0.0006 24 1 4.1735 2.0593 0.0010 25 1 7.2031 -0.7480 -1.3074 26 1 5.8316 -1.6871 -1.3617 27 1 9.3732 -0.7901 0.6979 28 1 1.2721 -2.8122 1.0269 29 1 0.5017 -2.3673 -0.5148 30 1 2.0438 -3.2563 -0.5144 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260177960.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:06 Heat of formation + Delta-G solvation = 16.240662 kcal Electronic energy + Delta-G solvation = -13129.011797 eV Core-core repulsion = 10923.337554 eV Total energy + Delta-G solvation = -2205.674242 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.72289 -35.10107 -32.81420 -32.37560 -30.75648 -27.92407 -26.86494 -25.34833 -22.60605 -21.43421 -20.00291 -16.60258 -15.76995 -15.43160 -14.63120 -14.27248 -14.16759 -13.60588 -12.90471 -12.78927 -12.64552 -12.25824 -12.11128 -11.73866 -11.60107 -11.32229 -11.01353 -10.78723 -10.68185 -9.92373 -9.78918 -9.02861 -8.60519 -8.52559 -7.96789 -7.13494 -6.03298 -4.16547 1.81604 1.97648 3.26001 3.34083 3.40426 4.35913 4.52083 4.96117 5.13710 5.21109 5.28951 5.41359 5.57020 5.72322 5.90790 5.94148 5.99120 6.04293 6.10890 6.39839 6.52527 6.72872 6.78714 6.86413 7.37046 7.63505 7.83569 8.14269 8.72897 8.94016 9.00403 9.19969 9.53231 10.95420 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.043207 B = 0.009093 C = 0.008406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.892776 B = 3078.390616 C = 3329.989670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.173 4.173 3 C -0.079 4.079 4 C -0.180 4.180 5 C 0.185 3.815 6 C 0.251 3.749 7 H 0.051 0.949 8 N -0.847 5.847 9 C -0.528 4.528 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.898 5.898 13 Si 0.898 3.102 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.284 1.284 17 N -0.464 5.464 18 C 0.119 3.881 19 C -0.100 4.100 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.122 0.878 24 H 0.127 0.873 25 H 0.355 0.645 26 H 0.320 0.680 27 H 0.264 0.736 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.114 0.830 -0.949 12.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.175 4.175 3 C -0.105 4.105 4 C -0.201 4.201 5 C 0.047 3.953 6 C 0.141 3.859 7 H 0.069 0.931 8 N -0.377 5.377 9 C -0.568 4.568 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.538 5.538 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 N -0.174 5.174 18 C -0.019 4.019 19 C -0.157 4.157 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.140 0.860 24 H 0.145 0.855 25 H 0.172 0.828 26 H 0.129 0.871 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.850 0.662 -1.341 11.944 hybrid contribution 0.489 -0.311 1.521 1.628 sum -11.361 0.351 0.180 11.368 Atomic orbital electron populations 1.20636 0.91331 1.02210 1.01633 1.20491 0.96568 0.93995 1.06451 1.21293 0.94149 0.97325 0.97762 1.22006 0.94534 0.99670 1.03842 1.21983 0.98306 0.86887 0.88122 1.17994 0.82418 0.96758 0.88755 0.93146 1.59429 1.17275 1.24859 1.36184 1.21820 0.91854 1.31182 1.11985 0.92364 1.25008 0.96612 0.95682 0.96639 1.69754 1.01773 1.44769 1.37547 0.86435 0.78588 0.79997 0.82367 1.19817 1.20955 1.20992 1.67441 1.06133 1.31980 1.11801 1.21150 0.90485 0.94322 0.95963 1.20662 0.98763 0.93953 1.02346 0.91825 0.91639 0.92169 0.85997 0.85478 0.82817 0.87076 0.92617 0.91117 0.91368 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 9.21 36.01 0.33 -0.85 16 2 C -0.17 -2.83 5.90 -104.48 -0.62 -3.45 16 3 C -0.08 -1.34 9.86 -39.28 -0.39 -1.72 16 4 C -0.18 -3.59 9.71 -39.45 -0.38 -3.97 16 5 C 0.19 4.32 5.68 -82.59 -0.47 3.85 16 6 C 0.25 6.54 3.03 -70.01 -0.21 6.33 16 7 H 0.05 1.39 7.87 -51.93 -0.41 0.98 16 8 N -0.85 -21.45 9.18 -6.65 -0.06 -21.51 16 9 C -0.53 -14.84 8.53 -34.44 -0.29 -15.14 16 10 H 0.06 1.70 7.68 -52.49 -0.40 1.29 16 11 C 0.06 1.72 5.38 -17.82 -0.10 1.63 16 12 N -0.90 -25.28 11.54 55.43 0.64 -24.64 16 13 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 N -0.46 -10.49 9.81 -5.75 -0.06 -10.55 16 18 C 0.12 2.22 6.78 -82.59 -0.56 1.66 16 19 C -0.10 -1.44 9.36 36.00 0.34 -1.10 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.69 6.72 -51.92 -0.35 0.34 16 22 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 23 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 24 H 0.13 2.33 7.95 -52.48 -0.42 1.91 16 25 H 0.36 9.41 7.08 -39.29 -0.28 9.14 16 26 H 0.32 8.07 8.92 -39.29 -0.35 7.72 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.78 6.69 -51.92 -0.35 0.44 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 256.63 15.07 3.87 3.87 Total: -1.00 -29.74 256.63 -6.78 -36.52 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -3.80 Total: 12.41 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -2.35 Total: -12.76 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.52 Total: -56.70 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.74 -6.78 -36.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260177960.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.760 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds