Wall clock time and date at job start Thu Apr 9 2020 14:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36934 * 120.00031 * 2 1 4 4 H 1.08003 * 120.00023 * 146.64294 * 3 2 1 5 5 C 1.38814 * 120.00253 * 326.64413 * 3 2 1 6 6 N 1.31616 * 120.00218 * 154.24024 * 5 3 2 7 7 Si 1.86796 * 119.99518 * 334.24594 * 5 3 2 8 8 H 1.48496 * 109.47438 * 95.38460 * 7 5 3 9 9 H 1.48504 * 109.47009 * 215.38437 * 7 5 3 10 10 H 1.48503 * 109.47604 * 335.38089 * 7 5 3 11 11 C 1.46502 * 119.99856 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.82862 * 183.71313 * 11 2 1 13 13 C 1.54457 * 110.93579 * 60.00634 * 11 2 1 14 14 C 1.51287 * 104.95475 * 216.16936 * 13 11 2 15 15 C 1.41116 * 142.07535 * 197.21549 * 14 13 11 16 16 C 1.34761 * 107.41391 * 180.02562 * 15 14 13 17 17 N 1.36228 * 108.23052 * 359.64842 * 16 15 14 18 18 H 0.97001 * 125.61656 * 180.19713 * 17 16 15 19 19 C 1.34654 * 110.43494 * 16.88456 * 14 13 11 20 20 C 1.51410 * 110.26961 * 0.02562 * 19 14 13 21 21 H 1.08996 * 109.47536 * 274.68591 * 1 2 3 22 22 H 1.08998 * 109.47024 * 34.69063 * 1 2 3 23 23 H 1.09001 * 109.46899 * 154.68672 * 1 2 3 24 24 H 0.96999 * 119.99750 * 179.97438 * 6 5 3 25 25 H 1.09000 * 110.34213 * 97.30166 * 13 11 2 26 26 H 1.09000 * 110.34269 * 335.03822 * 13 11 2 27 27 H 1.08001 * 126.29217 * 359.90286 * 15 14 13 28 28 H 1.08002 * 125.88736 * 179.90940 * 16 15 14 29 29 H 1.09002 * 110.33142 * 101.95712 * 20 19 14 30 30 H 1.08999 * 110.33442 * 224.20013 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0962 1.2629 0.5143 5 6 1.6271 2.2891 -0.6610 6 7 1.9593 3.5038 -0.2784 7 14 0.4524 2.0495 -2.0934 8 1 -0.9474 2.1336 -1.6050 9 1 0.6870 3.1078 -3.1084 10 1 0.6837 0.7165 -2.7058 11 6 2.1975 -1.2688 0.0006 12 1 3.2717 -1.0961 0.0665 13 6 1.8489 -2.1079 -1.2485 14 6 1.8473 -3.5421 -0.7672 15 6 1.9024 -4.8728 -1.2337 16 6 1.8509 -5.6804 -0.1561 17 7 1.7740 -4.9001 0.9579 18 1 1.7278 -5.2228 1.8715 19 6 1.7721 -3.5871 0.5764 20 6 1.7143 -2.1854 1.1458 21 1 -0.3634 0.0839 1.0242 22 1 -0.3633 0.8450 -0.5849 23 1 -0.3633 -0.9290 -0.4394 24 1 1.5945 4.2746 -0.7405 25 1 2.6044 -1.9684 -2.0216 26 1 0.8638 -1.8338 -1.6262 27 1 1.9710 -5.1864 -2.2649 28 1 1.8716 -6.7601 -0.1725 29 1 0.6920 -1.9329 1.4276 30 1 2.3779 -2.0983 2.0061 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259479424.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:53 Heat of formation + Delta-G solvation = 87.779396 kcal Electronic energy + Delta-G solvation = -13384.333739 eV Core-core repulsion = 11181.761649 eV Total energy + Delta-G solvation = -2202.572090 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.10332 -36.93439 -33.57868 -31.20545 -30.42220 -26.90619 -26.54070 -25.93774 -22.85559 -20.32496 -19.34732 -18.44501 -17.01364 -16.83387 -15.61209 -14.55697 -13.98342 -13.51172 -13.04450 -12.99426 -12.69892 -12.38346 -12.13807 -12.06486 -11.40837 -10.89924 -10.83785 -10.64079 -10.50140 -10.24357 -9.94077 -9.49684 -8.46642 -8.36095 -7.50412 -6.87870 -5.98567 -3.33753 2.53922 3.30791 3.34922 3.37714 3.51455 3.58128 4.56160 4.93092 5.10917 5.28850 5.34837 5.58211 5.74436 5.87134 6.04557 6.09493 6.25163 6.31559 6.41783 6.54985 6.57366 6.73155 6.77868 6.81406 6.97010 7.32779 7.54610 7.87350 8.04225 8.37661 8.99212 9.73476 10.12633 11.17168 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.062027 B = 0.009004 C = 0.008485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.305026 B = 3109.043899 C = 3299.242318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.598 5.598 3 C -0.271 4.271 4 H 0.082 0.918 5 C 0.034 3.966 6 N -0.897 5.897 7 Si 0.879 3.121 8 H -0.287 1.287 9 H -0.303 1.303 10 H -0.268 1.268 11 C 0.188 3.812 12 H 0.085 0.915 13 C -0.074 4.074 14 C -0.179 4.179 15 C -0.182 4.182 16 C -0.024 4.024 17 N -0.548 5.548 18 H 0.406 0.594 19 C -0.014 4.014 20 C -0.055 4.055 21 H 0.019 0.981 22 H 0.040 0.960 23 H 0.037 0.963 24 H 0.263 0.737 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.161 0.839 29 H 0.077 0.923 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -15.405 1.149 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.319 5.319 3 C -0.400 4.400 4 H 0.100 0.900 5 C -0.166 4.166 6 N -0.538 5.538 7 Si 0.709 3.291 8 H -0.216 1.216 9 H -0.231 1.231 10 H -0.193 1.193 11 C 0.079 3.921 12 H 0.103 0.897 13 C -0.114 4.114 14 C -0.186 4.186 15 C -0.207 4.207 16 C -0.154 4.154 17 N -0.143 5.143 18 H 0.241 0.759 19 C -0.127 4.127 20 C -0.095 4.095 21 H 0.037 0.963 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.146 0.854 28 H 0.179 0.821 29 H 0.096 0.904 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.601 -15.229 1.264 15.365 hybrid contribution -0.780 -0.396 -0.493 1.004 sum -2.381 -15.625 0.771 15.825 Atomic orbital electron populations 1.21307 0.84834 0.98844 0.98570 1.44095 1.00535 1.01539 1.85761 1.18815 1.06791 0.85787 1.28561 0.90010 1.25352 0.98248 0.95024 0.97988 1.69911 1.46344 0.97586 1.39971 0.86947 0.80195 0.77598 0.84314 1.21556 1.23120 1.19328 1.21099 0.96378 0.84636 0.89974 0.89693 1.21285 1.01552 0.88628 0.99938 1.20562 1.08969 0.94767 0.94276 1.20357 1.10903 0.91575 0.97868 1.21575 1.12466 0.96122 0.85229 1.41352 1.59851 1.04839 1.08260 0.75879 1.21286 1.08997 0.85998 0.96412 1.21308 1.02170 0.86094 0.99909 0.96332 0.94214 0.94442 0.92716 0.92039 0.91344 0.85362 0.82126 0.90422 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.42 8.14 59.85 0.49 2.91 16 2 N -0.60 -14.33 2.57 -171.75 -0.44 -14.77 16 3 C -0.27 -7.61 9.87 -15.06 -0.15 -7.75 16 4 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 5 C 0.03 1.00 5.29 -17.43 -0.09 0.90 16 6 N -0.90 -27.43 13.97 55.49 0.78 -26.66 16 7 Si 0.88 22.49 25.10 -169.99 -4.27 18.22 16 8 H -0.29 -7.16 6.63 56.52 0.37 -6.78 16 9 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 C 0.19 3.83 3.60 -66.41 -0.24 3.60 16 12 H 0.08 1.76 7.96 -51.93 -0.41 1.35 16 13 C -0.07 -1.43 6.32 -26.83 -0.17 -1.60 16 14 C -0.18 -3.17 6.93 -104.51 -0.72 -3.89 16 15 C -0.18 -2.77 10.87 -39.72 -0.43 -3.20 16 16 C -0.02 -0.31 11.93 -16.83 -0.20 -0.51 16 17 N -0.55 -7.19 6.08 -8.90 -0.05 -7.24 16 18 H 0.41 3.93 8.96 -40.82 -0.37 3.56 16 19 C -0.01 -0.23 8.04 -81.33 -0.65 -0.89 16 20 C -0.05 -0.95 6.40 -26.78 -0.17 -1.12 16 21 H 0.02 0.39 8.09 -51.93 -0.42 -0.03 16 22 H 0.04 0.96 2.79 -51.93 -0.15 0.81 16 23 H 0.04 0.74 6.58 -51.93 -0.34 0.40 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.39 6.47 -51.93 -0.34 1.06 16 27 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.08 1.37 6.88 -51.93 -0.36 1.01 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 242.48 15.07 3.65 3.65 Total: -1.00 -31.48 242.48 -6.33 -37.81 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -3.65 Total: 0.53 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.35 Total: -11.55 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.28 Total: -48.67 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.27 Total: 18.22 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.48 -6.33 -37.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259479424.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.589 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds