Wall clock time and date at job start Thu Apr 9 2020 14:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36934 * 120.00031 * 2 1 4 4 H 1.08003 * 120.00023 * 146.64294 * 3 2 1 5 5 C 1.38814 * 120.00253 * 326.64413 * 3 2 1 6 6 N 1.31616 * 120.00218 * 154.24024 * 5 3 2 7 7 Si 1.86796 * 119.99518 * 334.24594 * 5 3 2 8 8 H 1.48496 * 109.47438 * 95.38460 * 7 5 3 9 9 H 1.48504 * 109.47009 * 215.38437 * 7 5 3 10 10 H 1.48503 * 109.47604 * 335.38089 * 7 5 3 11 11 C 1.46502 * 119.99856 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.82862 * 183.71313 * 11 2 1 13 13 C 1.54457 * 110.93579 * 60.00634 * 11 2 1 14 14 C 1.51287 * 104.95475 * 216.16936 * 13 11 2 15 15 C 1.41116 * 142.07535 * 197.21549 * 14 13 11 16 16 C 1.34761 * 107.41391 * 180.02562 * 15 14 13 17 17 N 1.36228 * 108.23052 * 359.64842 * 16 15 14 18 18 H 0.97001 * 125.61656 * 180.19713 * 17 16 15 19 19 C 1.34654 * 110.43494 * 16.88456 * 14 13 11 20 20 C 1.51410 * 110.26961 * 0.02562 * 19 14 13 21 21 H 1.08996 * 109.47536 * 274.68591 * 1 2 3 22 22 H 1.08998 * 109.47024 * 34.69063 * 1 2 3 23 23 H 1.09001 * 109.46899 * 154.68672 * 1 2 3 24 24 H 0.96999 * 119.99750 * 179.97438 * 6 5 3 25 25 H 1.09000 * 110.34213 * 97.30166 * 13 11 2 26 26 H 1.09000 * 110.34269 * 335.03822 * 13 11 2 27 27 H 1.08001 * 126.29217 * 359.90286 * 15 14 13 28 28 H 1.08002 * 125.88736 * 179.90940 * 16 15 14 29 29 H 1.09002 * 110.33142 * 101.95712 * 20 19 14 30 30 H 1.08999 * 110.33442 * 224.20013 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0962 1.2629 0.5143 5 6 1.6271 2.2891 -0.6610 6 7 1.9593 3.5038 -0.2784 7 14 0.4524 2.0495 -2.0934 8 1 -0.9474 2.1336 -1.6050 9 1 0.6870 3.1078 -3.1084 10 1 0.6837 0.7165 -2.7058 11 6 2.1975 -1.2688 0.0006 12 1 3.2717 -1.0961 0.0665 13 6 1.8489 -2.1079 -1.2485 14 6 1.8473 -3.5421 -0.7672 15 6 1.9024 -4.8728 -1.2337 16 6 1.8509 -5.6804 -0.1561 17 7 1.7740 -4.9001 0.9579 18 1 1.7278 -5.2228 1.8715 19 6 1.7721 -3.5871 0.5764 20 6 1.7143 -2.1854 1.1458 21 1 -0.3634 0.0839 1.0242 22 1 -0.3633 0.8450 -0.5849 23 1 -0.3633 -0.9290 -0.4394 24 1 1.5945 4.2746 -0.7405 25 1 2.6044 -1.9684 -2.0216 26 1 0.8638 -1.8338 -1.6262 27 1 1.9710 -5.1864 -2.2649 28 1 1.8716 -6.7601 -0.1725 29 1 0.6920 -1.9329 1.4276 30 1 2.3779 -2.0983 2.0061 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259479424.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:53 Heat of formation + Delta-G solvation = 67.208607 kcal Electronic energy + Delta-G solvation = -13385.225755 eV Core-core repulsion = 11181.761649 eV Total energy + Delta-G solvation = -2203.464106 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.29464 -38.57733 -35.35210 -33.19946 -31.63568 -28.43212 -28.00511 -27.72675 -24.66716 -21.42454 -20.98817 -19.71588 -18.96740 -18.16281 -17.49298 -16.29076 -15.52418 -14.93850 -14.74706 -14.42893 -14.21294 -14.01692 -13.91134 -13.62212 -12.89044 -12.68770 -12.46233 -12.21948 -12.13788 -12.03802 -11.81845 -11.50372 -10.60811 -9.50761 -8.86237 -8.71710 -8.21452 -5.53243 1.30571 1.40832 1.43018 1.54682 2.09895 2.28869 2.42573 3.03509 3.29352 3.87710 4.06740 4.31143 4.36544 4.47022 4.53828 4.72203 4.75555 4.86254 4.88244 4.92954 5.02932 5.23684 5.30702 5.38731 5.58605 5.90602 6.10939 6.16037 6.34172 6.90100 6.95564 7.61839 8.03341 8.98469 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.062027 B = 0.009004 C = 0.008485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.305026 B = 3109.043899 C = 3299.242318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.609 5.609 3 C -0.263 4.263 4 H 0.050 0.950 5 C -0.019 4.019 6 N -0.943 5.943 7 Si 0.942 3.058 8 H -0.274 1.274 9 H -0.308 1.308 10 H -0.263 1.263 11 C 0.180 3.820 12 H 0.071 0.929 13 C -0.067 4.067 14 C -0.205 4.205 15 C -0.212 4.212 16 C 0.006 3.994 17 N -0.535 5.535 18 H 0.425 0.575 19 C -0.026 4.026 20 C -0.042 4.042 21 H 0.028 0.972 22 H 0.024 0.976 23 H 0.062 0.938 24 H 0.264 0.736 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.140 0.860 28 H 0.208 0.792 29 H 0.077 0.923 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.604 -18.447 1.164 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.331 5.331 3 C -0.393 4.393 4 H 0.067 0.933 5 C -0.216 4.216 6 N -0.587 5.587 7 Si 0.772 3.228 8 H -0.201 1.201 9 H -0.237 1.237 10 H -0.187 1.187 11 C 0.072 3.928 12 H 0.089 0.911 13 C -0.107 4.107 14 C -0.212 4.212 15 C -0.236 4.236 16 C -0.124 4.124 17 N -0.131 5.131 18 H 0.264 0.736 19 C -0.139 4.139 20 C -0.082 4.082 21 H 0.047 0.953 22 H 0.042 0.958 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.225 0.775 29 H 0.095 0.905 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.629 -18.328 1.303 18.561 hybrid contribution -0.386 0.438 -0.428 0.724 sum -3.016 -17.890 0.875 18.164 Atomic orbital electron populations 1.21345 0.83655 0.99386 0.99131 1.44143 1.01356 1.01450 1.86182 1.18751 1.05797 0.87466 1.27265 0.93251 1.25931 1.00843 0.94671 1.00168 1.70018 1.48875 0.98430 1.41421 0.85913 0.78871 0.77282 0.80777 1.20115 1.23687 1.18730 1.21169 0.95483 0.83897 0.92234 0.91066 1.21048 1.00486 0.90315 0.98854 1.20578 1.10838 0.94703 0.95118 1.20647 1.12645 0.90764 0.99556 1.22273 1.08395 0.97850 0.83888 1.41368 1.58620 1.03488 1.09662 0.73647 1.20973 1.10313 0.86852 0.95803 1.20981 1.02099 0.86473 0.98680 0.95329 0.95774 0.91966 0.92722 0.92925 0.92479 0.84202 0.77486 0.90472 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.70 8.14 127.77 1.04 5.75 16 2 N -0.61 -29.20 2.57 -697.29 -1.79 -31.00 16 3 C -0.26 -15.12 9.87 84.03 0.83 -14.29 16 4 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 5 C -0.02 -1.14 5.29 84.86 0.45 -0.69 16 6 N -0.94 -59.25 13.97 21.65 0.30 -58.94 16 7 Si 0.94 47.03 25.10 68.60 1.72 48.75 16 8 H -0.27 -12.96 6.63 99.48 0.66 -12.30 16 9 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 10 H -0.26 -12.72 7.11 99.48 0.71 -12.02 16 11 C 0.18 7.32 3.60 45.98 0.17 7.49 16 12 H 0.07 3.04 7.96 -2.39 -0.02 3.02 16 13 C -0.07 -2.57 6.32 30.53 0.19 -2.37 16 14 C -0.21 -6.88 6.93 -19.79 -0.14 -7.02 16 15 C -0.21 -5.79 10.87 22.18 0.24 -5.55 16 16 C 0.01 0.13 11.93 83.21 0.99 1.13 16 17 N -0.54 -11.84 6.08 -182.09 -1.11 -12.95 16 18 H 0.43 6.31 8.96 -92.71 -0.83 5.48 16 19 C -0.03 -0.78 8.04 41.20 0.33 -0.45 16 20 C -0.04 -1.41 6.40 30.56 0.20 -1.22 16 21 H 0.03 1.17 8.09 -2.39 -0.02 1.15 16 22 H 0.02 1.13 2.79 -2.39 -0.01 1.12 16 23 H 0.06 2.36 6.58 -2.39 -0.02 2.35 16 24 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 2.28 6.47 -2.39 -0.02 2.26 16 27 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 28 H 0.21 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.08 2.58 6.88 -2.39 -0.02 2.56 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -68.43 242.48 3.69 -64.74 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.27 Total: 6.64 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 4.30 Total: -17.23 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -2.60 Total: -102.89 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.72 Total: 48.75 kcal Total: -68.43 3.69 -64.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259479424.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.945 kcal (2) G-P(sol) polarization free energy of solvation -68.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds