Wall clock time and date at job start Thu Apr 9 2020 14:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46931 * 111.00133 * 2 1 4 4 C 1.53517 * 109.60693 * 163.75451 * 3 2 1 5 5 C 1.50931 * 107.80909 * 49.23658 * 4 3 2 6 6 C 1.38454 * 128.46656 * 164.13238 * 5 4 3 7 7 C 1.39980 * 106.92234 * 180.23072 * 6 5 4 8 8 C 1.39952 * 126.31893 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99725 * 359.97438 * 8 7 6 10 10 C 1.40067 * 120.00124 * 180.02562 * 8 7 6 11 11 N 1.30857 * 120.00193 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00032 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47165 * 59.99578 * 12 10 8 14 14 H 1.48494 * 109.47535 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47263 * 300.00169 * 12 10 8 16 16 N 1.38240 * 107.36805 * 0.02562 * 7 6 5 17 17 H 0.97004 * 125.75270 * 179.97438 * 16 7 6 18 18 C 1.35561 * 108.49631 * 359.91886 * 16 7 6 19 19 C 1.47168 * 111.01737 * 235.25309 * 2 1 3 20 20 H 1.09007 * 109.47138 * 59.99971 * 1 2 3 21 21 H 1.09003 * 109.47277 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47133 * 299.99911 * 1 2 3 23 23 H 1.09003 * 109.44859 * 43.71610 * 3 2 1 24 24 H 1.09001 * 109.42688 * 283.78684 * 3 2 1 25 25 H 1.09002 * 109.79125 * 289.65860 * 4 3 2 26 26 H 1.09000 * 109.83578 * 168.84162 * 4 3 2 27 27 H 1.08000 * 126.53860 * 0.27114 * 6 5 4 28 28 H 0.96997 * 119.99993 * 180.02562 * 11 10 8 29 29 H 1.08997 * 109.50506 * 56.28151 * 19 2 1 30 30 H 1.09004 * 109.86343 * 295.68684 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3717 0.0000 4 6 3.4764 1.3550 0.4046 5 6 4.1713 0.3074 -0.4306 6 6 5.5289 0.1342 -0.6401 7 6 5.6725 -0.9676 -1.4915 8 6 6.8780 -1.4971 -1.9658 9 1 7.8163 -1.0477 -1.6760 10 6 6.8676 -2.6094 -2.8171 11 7 5.7307 -3.1537 -3.1686 12 14 8.4767 -3.3157 -3.4506 13 1 9.3126 -3.7503 -2.3027 14 1 8.1949 -4.4806 -4.3274 15 1 9.2020 -2.2773 -4.2259 16 7 4.4037 -1.4354 -1.7785 17 1 4.1941 -2.1929 -2.3471 18 6 3.5019 -0.6579 -1.1305 19 6 1.9968 -0.7830 -1.1288 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.4321 1.9768 0.7103 24 1 1.8968 1.7980 -0.9983 25 1 3.5674 1.1046 1.4615 26 1 3.9220 2.3320 0.2171 27 1 6.3253 0.7342 -0.2252 28 1 5.7236 -3.9241 -3.7579 29 1 1.5949 -0.3910 -2.0631 30 1 1.7148 -1.8300 -1.0173 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259558496.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:02 Heat of formation + Delta-G solvation = 30.911825 kcal Electronic energy + Delta-G solvation = -13295.194968 eV Core-core repulsion = 11090.156915 eV Total energy + Delta-G solvation = -2205.038053 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.48080 -36.82043 -33.40375 -31.61835 -29.45905 -27.87590 -26.95885 -24.30073 -22.18412 -21.15380 -19.03446 -17.62502 -17.06608 -15.40267 -14.91180 -14.51469 -14.42532 -13.71739 -12.97026 -12.49701 -12.29298 -12.16514 -11.73497 -11.63195 -11.39713 -11.22965 -11.12687 -10.81744 -10.62435 -10.29159 -9.86245 -9.66869 -9.27028 -7.88032 -6.99866 -6.81422 -6.68114 -4.13039 2.99999 3.08505 3.12670 3.86137 3.96941 4.27531 4.35702 5.19218 5.46806 5.47771 5.60884 5.66197 5.85806 6.01546 6.03125 6.09810 6.25906 6.40623 6.50242 6.72952 6.83306 7.19106 7.41545 7.44594 7.50432 7.71552 7.97846 8.12526 8.34117 8.82179 9.01175 9.25325 9.79293 10.27331 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.066449 B = 0.008377 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.273187 B = 3341.494529 C = 3714.554167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.539 5.539 3 C 0.064 3.936 4 C -0.037 4.037 5 C -0.134 4.134 6 C -0.331 4.331 7 C 0.230 3.770 8 C -0.443 4.443 9 H 0.089 0.911 10 C 0.063 3.937 11 N -0.858 5.858 12 Si 0.928 3.072 13 H -0.266 1.266 14 H -0.281 1.281 15 H -0.267 1.267 16 N -0.539 5.539 17 H 0.417 0.583 18 C -0.107 4.107 19 C 0.153 3.847 20 H 0.019 0.981 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.030 0.970 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.284 0.716 29 H 0.022 0.978 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 2.960 1.783 6.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.263 5.263 3 C -0.064 4.064 4 C -0.075 4.075 5 C -0.142 4.142 6 C -0.353 4.353 7 C 0.114 3.886 8 C -0.479 4.479 9 H 0.107 0.893 10 C -0.148 4.148 11 N -0.492 5.492 12 Si 0.754 3.246 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.191 1.191 16 N -0.146 5.146 17 H 0.264 0.736 18 C -0.217 4.217 19 C 0.025 3.975 20 H 0.037 0.963 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.095 0.905 29 H 0.040 0.960 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.981 2.440 1.988 6.758 hybrid contribution 0.289 -0.388 -1.336 1.421 sum -5.692 2.052 0.652 6.085 Atomic orbital electron populations 1.22325 0.88163 1.01580 0.99973 1.61699 1.06185 1.14061 1.44387 1.22088 0.96791 0.88371 0.99122 1.19991 0.92094 0.96929 0.98464 1.18624 0.93480 0.98812 1.03244 1.20287 0.93992 1.06221 1.14841 1.18048 0.83883 0.92352 0.94335 1.18771 0.92811 1.11070 1.25263 0.89281 1.25883 0.98319 0.95825 0.94762 1.68823 1.27130 1.21530 1.31762 0.86022 0.81208 0.78388 0.79012 1.19095 1.20613 1.19138 1.42372 1.04739 1.27284 1.40156 0.73642 1.19464 0.89854 1.01737 1.10627 1.20124 0.90813 0.96743 0.89838 0.96267 0.91764 0.91704 0.91862 0.95194 0.92205 0.92385 0.87912 0.90530 0.95994 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.54 60.06 0.57 0.96 16 2 N -0.54 -9.81 4.85 -243.57 -1.18 -10.99 16 3 C 0.06 1.12 5.53 -3.54 -0.02 1.10 16 4 C -0.04 -0.73 6.51 -27.50 -0.18 -0.91 16 5 C -0.13 -3.31 5.97 -104.97 -0.63 -3.93 16 6 C -0.33 -8.87 10.87 -38.85 -0.42 -9.29 16 7 C 0.23 6.48 6.72 -83.68 -0.56 5.92 16 8 C -0.44 -12.17 9.33 -38.25 -0.36 -12.53 16 9 H 0.09 2.33 7.85 -52.48 -0.41 1.92 16 10 C 0.06 1.61 5.50 -17.28 -0.10 1.51 16 11 N -0.86 -22.17 10.68 55.56 0.59 -21.58 16 12 Si 0.93 19.30 29.56 -169.99 -5.03 14.28 16 13 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 14 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 15 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 16 N -0.54 -14.48 5.76 -6.42 -0.04 -14.51 16 17 H 0.42 11.07 6.28 -40.82 -0.26 10.82 16 18 C -0.11 -2.65 7.15 -81.32 -0.58 -3.23 16 19 C 0.15 3.12 5.85 -4.67 -0.03 3.09 16 20 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 21 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 22 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 23 H 0.06 0.92 7.95 -51.93 -0.41 0.50 16 24 H 0.03 0.53 8.07 -51.93 -0.42 0.11 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.10 2.60 8.06 -52.49 -0.42 2.18 16 28 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 248.57 15.07 3.75 3.75 Total: -1.00 -28.87 248.57 -8.22 -37.08 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.01 Total: 9.28 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -2.30 Total: -17.30 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.63 Total: -47.08 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.87 -8.22 -37.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259558496.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.993 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds