Wall clock time and date at job start Thu Apr 9 2020 14:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46931 * 111.00133 * 2 1 4 4 C 1.53517 * 109.60693 * 163.75451 * 3 2 1 5 5 C 1.50931 * 107.80909 * 49.23658 * 4 3 2 6 6 C 1.38454 * 128.46656 * 164.13238 * 5 4 3 7 7 C 1.39980 * 106.92234 * 180.23072 * 6 5 4 8 8 C 1.39952 * 126.31893 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99725 * 359.97438 * 8 7 6 10 10 C 1.40067 * 120.00124 * 180.02562 * 8 7 6 11 11 N 1.30857 * 120.00193 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00032 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47165 * 59.99578 * 12 10 8 14 14 H 1.48494 * 109.47535 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47263 * 300.00169 * 12 10 8 16 16 N 1.38240 * 107.36805 * 0.02562 * 7 6 5 17 17 H 0.97004 * 125.75270 * 179.97438 * 16 7 6 18 18 C 1.35561 * 108.49631 * 359.91886 * 16 7 6 19 19 C 1.47168 * 111.01737 * 235.25309 * 2 1 3 20 20 H 1.09007 * 109.47138 * 59.99971 * 1 2 3 21 21 H 1.09003 * 109.47277 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47133 * 299.99911 * 1 2 3 23 23 H 1.09003 * 109.44859 * 43.71610 * 3 2 1 24 24 H 1.09001 * 109.42688 * 283.78684 * 3 2 1 25 25 H 1.09002 * 109.79125 * 289.65860 * 4 3 2 26 26 H 1.09000 * 109.83578 * 168.84162 * 4 3 2 27 27 H 1.08000 * 126.53860 * 0.27114 * 6 5 4 28 28 H 0.96997 * 119.99993 * 180.02562 * 11 10 8 29 29 H 1.08997 * 109.50506 * 56.28151 * 19 2 1 30 30 H 1.09004 * 109.86343 * 295.68684 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3717 0.0000 4 6 3.4764 1.3550 0.4046 5 6 4.1713 0.3074 -0.4306 6 6 5.5289 0.1342 -0.6401 7 6 5.6725 -0.9676 -1.4915 8 6 6.8780 -1.4971 -1.9658 9 1 7.8163 -1.0477 -1.6760 10 6 6.8676 -2.6094 -2.8171 11 7 5.7307 -3.1537 -3.1686 12 14 8.4767 -3.3157 -3.4506 13 1 9.3126 -3.7503 -2.3027 14 1 8.1949 -4.4806 -4.3274 15 1 9.2020 -2.2773 -4.2259 16 7 4.4037 -1.4354 -1.7785 17 1 4.1941 -2.1929 -2.3471 18 6 3.5019 -0.6579 -1.1305 19 6 1.9968 -0.7830 -1.1288 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.4321 1.9768 0.7103 24 1 1.8968 1.7980 -0.9983 25 1 3.5674 1.1046 1.4615 26 1 3.9220 2.3320 0.2171 27 1 6.3253 0.7342 -0.2252 28 1 5.7236 -3.9241 -3.7579 29 1 1.5949 -0.3910 -2.0631 30 1 1.7148 -1.8300 -1.0173 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259558496.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:02 Heat of formation + Delta-G solvation = 12.042446 kcal Electronic energy + Delta-G solvation = -13296.013206 eV Core-core repulsion = 11090.156915 eV Total energy + Delta-G solvation = -2205.856290 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.34757 -38.35195 -35.33427 -33.26237 -31.28231 -29.64965 -28.66659 -25.82267 -23.93561 -22.66175 -21.01530 -19.59141 -18.88209 -17.20866 -16.54359 -16.05141 -15.86054 -15.32970 -14.57992 -14.11577 -13.97016 -13.92765 -13.39860 -13.27361 -12.94647 -12.84795 -12.70911 -12.48120 -12.31967 -11.99066 -11.56736 -11.39453 -11.15911 -9.27881 -8.99687 -8.74952 -8.66082 -6.17032 1.31090 1.38841 1.51663 1.96309 2.21702 2.35651 2.91263 3.39027 3.42449 4.12378 4.27133 4.42373 4.48572 4.59543 4.67174 4.69697 4.81981 4.98219 5.03006 5.05399 5.22319 5.28831 5.44610 5.60219 5.93603 6.03164 6.13355 6.26712 6.41061 6.80453 7.05822 7.21799 7.76884 8.34608 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.066449 B = 0.008377 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.273187 B = 3341.494529 C = 3714.554167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.553 5.553 3 C 0.068 3.932 4 C -0.037 4.037 5 C -0.150 4.150 6 C -0.361 4.361 7 C 0.192 3.808 8 C -0.484 4.484 9 H 0.088 0.912 10 C 0.023 3.977 11 N -0.877 5.877 12 Si 1.005 2.995 13 H -0.262 1.262 14 H -0.268 1.268 15 H -0.261 1.261 16 N -0.550 5.550 17 H 0.414 0.586 18 C -0.118 4.118 19 C 0.158 3.842 20 H 0.029 0.971 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.101 0.899 24 H 0.025 0.975 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.293 0.707 29 H 0.029 0.971 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.899 2.999 1.852 7.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.278 5.278 3 C -0.060 4.060 4 C -0.075 4.075 5 C -0.157 4.157 6 C -0.384 4.384 7 C 0.077 3.923 8 C -0.519 4.519 9 H 0.106 0.894 10 C -0.186 4.186 11 N -0.511 5.511 12 Si 0.825 3.175 13 H -0.186 1.186 14 H -0.192 1.192 15 H -0.186 1.186 16 N -0.157 5.157 17 H 0.260 0.740 18 C -0.228 4.228 19 C 0.029 3.971 20 H 0.048 0.952 21 H 0.090 0.910 22 H 0.107 0.893 23 H 0.120 0.880 24 H 0.044 0.956 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.104 0.896 29 H 0.047 0.953 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.962 2.495 2.072 7.680 hybrid contribution 0.523 -0.393 -1.338 1.490 sum -6.439 2.102 0.733 6.813 Atomic orbital electron populations 1.22436 0.85181 1.02744 1.01597 1.61685 1.08855 1.14214 1.43094 1.22101 0.95396 0.88575 0.99921 1.20091 0.93679 0.95946 0.97742 1.19205 0.92846 1.00030 1.03622 1.20568 0.95497 1.06650 1.15691 1.18516 0.84864 0.93441 0.95515 1.19054 0.92759 1.12847 1.27241 0.89405 1.26833 1.02294 0.95368 0.94105 1.68862 1.28976 1.21692 1.31530 0.84887 0.76297 0.77807 0.78486 1.18596 1.19210 1.18569 1.42468 1.04921 1.27627 1.40639 0.74029 1.20311 0.92009 1.00981 1.09455 1.20113 0.87898 0.97737 0.91307 0.95233 0.90981 0.89322 0.88034 0.95621 0.91747 0.91052 0.87862 0.89579 0.95288 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.54 127.69 1.22 1.89 16 2 N -0.55 -18.71 4.85 -924.52 -4.49 -23.20 16 3 C 0.07 2.17 5.53 86.47 0.48 2.64 16 4 C -0.04 -1.40 6.51 30.09 0.20 -1.21 16 5 C -0.15 -7.46 5.97 -20.09 -0.12 -7.58 16 6 C -0.36 -20.06 10.87 22.74 0.25 -19.81 16 7 C 0.19 11.27 6.72 38.97 0.26 11.53 16 8 C -0.48 -27.44 9.33 23.13 0.22 -27.23 16 9 H 0.09 4.78 7.85 -2.91 -0.02 4.76 16 10 C 0.02 1.16 5.50 85.28 0.47 1.63 16 11 N -0.88 -45.71 10.68 21.86 0.23 -45.48 16 12 Si 1.00 39.36 29.56 68.60 2.03 41.39 16 13 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 14 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 15 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 16 N -0.55 -30.36 5.76 -174.22 -1.00 -31.37 16 17 H 0.41 22.59 6.28 -92.71 -0.58 22.01 16 18 C -0.12 -5.89 7.15 41.74 0.30 -5.59 16 19 C 0.16 6.26 5.85 85.61 0.50 6.76 16 20 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 21 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 22 H 0.09 1.74 8.08 -2.39 -0.02 1.72 16 23 H 0.10 2.49 7.95 -2.39 -0.02 2.47 16 24 H 0.03 0.84 8.07 -2.39 -0.02 0.82 16 25 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.10 5.48 8.06 -2.91 -0.02 5.45 16 28 H 0.29 13.79 8.30 -92.71 -0.77 13.03 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -63.30 248.57 1.09 -62.21 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.55 Total: 33.40 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 3.77 Total: -36.95 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -5.26 Total: -100.04 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -63.30 1.09 -62.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259558496.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.255 kcal (2) G-P(sol) polarization free energy of solvation -63.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds