Wall clock time and date at job start Thu Apr 9 2020 14:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.82002 * 2 1 4 4 C 1.54444 * 110.92176 * 123.67444 * 2 1 3 5 5 C 1.51322 * 104.99266 * 92.48878 * 4 2 1 6 6 C 1.35140 * 110.30619 * 17.06535 * 5 4 2 7 7 C 1.40174 * 107.86209 * 180.27275 * 6 5 4 8 8 N 1.30743 * 108.23890 * 359.77187 * 7 6 5 9 9 N 1.35218 * 141.95030 * 196.91989 * 5 4 2 10 10 C 1.46502 * 126.02885 * 0.04542 * 9 5 4 11 11 C 1.51362 * 110.24899 * 0.15540 * 6 5 4 12 12 H 1.09000 * 110.33250 * 224.41830 * 11 6 5 13 13 C 1.50697 * 110.33642 * 102.17880 * 11 6 5 14 14 H 1.08004 * 120.00021 * 275.40976 * 13 11 6 15 15 C 1.37876 * 120.00315 * 95.41135 * 13 11 6 16 16 N 1.31510 * 120.00110 * 183.65111 * 15 13 11 17 17 Si 1.86801 * 119.99573 * 3.65074 * 15 13 11 18 18 H 1.48494 * 109.47278 * 89.58065 * 17 15 13 19 19 H 1.48499 * 109.47046 * 209.58145 * 17 15 13 20 20 H 1.48499 * 109.47072 * 329.57704 * 17 15 13 21 21 H 1.08994 * 109.46922 * 297.78096 * 1 2 3 22 22 H 1.09003 * 109.46941 * 57.77828 * 1 2 3 23 23 H 1.09002 * 109.47150 * 177.77902 * 1 2 3 24 24 H 1.08994 * 110.33847 * 333.61037 * 4 2 1 25 25 H 1.09001 * 110.41944 * 211.41157 * 4 2 1 26 26 H 1.07994 * 125.87962 * 179.77421 * 7 6 5 27 27 H 1.09008 * 109.47205 * 269.71352 * 10 9 5 28 28 H 1.09000 * 109.47462 * 29.71015 * 10 9 5 29 29 H 1.08999 * 109.47613 * 149.71229 * 10 9 5 30 30 H 0.97000 * 120.00050 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0188 0.0000 4 6 2.0815 -0.7999 1.2005 5 6 2.2806 -2.2054 0.6763 6 6 2.2842 -2.2057 -0.6751 7 6 2.4649 -3.5278 -1.1043 8 7 2.5707 -4.2902 -0.0475 9 7 2.4610 -3.4803 1.0891 10 6 2.5241 -3.9347 2.4805 11 6 2.0916 -0.7990 -1.1998 12 1 1.3711 -0.7953 -2.0177 13 6 3.4080 -0.2259 -1.6574 14 1 4.0696 0.2436 -0.9445 15 6 3.7680 -0.3009 -2.9863 16 7 4.9470 0.1343 -3.3738 17 14 2.5810 -1.0207 -4.2362 18 1 1.7180 0.0593 -4.7784 19 1 3.3474 -1.6452 -5.3442 20 1 1.7338 -2.0485 -3.5796 21 1 -0.3633 0.4790 0.9092 22 1 -0.3633 0.5480 -0.8694 23 1 -0.3633 -1.0269 -0.0398 24 1 1.3617 -0.7993 2.0189 25 1 3.0317 -0.3812 1.5323 26 1 2.5091 -3.8595 -2.1311 27 1 3.5580 -3.9079 2.8249 28 1 1.9162 -3.2797 3.1046 29 1 2.1452 -4.9545 2.5472 30 1 5.2003 0.0812 -4.3086 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259783641.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:24 Heat of formation + Delta-G solvation = 80.127422 kcal Electronic energy + Delta-G solvation = -13589.762511 eV Core-core repulsion = 11386.858606 eV Total energy + Delta-G solvation = -2202.903904 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.77760 -36.44763 -32.69775 -32.24633 -29.41736 -28.35477 -25.86691 -25.56605 -22.79692 -20.19570 -18.89341 -18.70172 -16.88595 -15.80085 -15.03929 -14.11896 -13.74640 -13.65028 -12.96532 -12.86266 -12.57567 -12.32103 -12.09506 -11.57542 -11.47598 -10.96664 -10.83459 -10.66762 -10.51043 -9.82995 -9.65767 -9.47576 -9.20667 -8.51945 -8.47789 -7.20071 -6.03344 -4.01149 2.59911 3.05318 3.32452 3.42377 3.46755 3.76776 4.48066 4.94102 5.15095 5.31355 5.40743 5.45149 5.60405 5.68608 5.81526 5.89721 6.06856 6.20426 6.28949 6.39710 6.53107 6.70810 6.88161 7.01327 7.16380 7.33294 7.61669 7.75592 7.85850 8.47214 8.56317 9.00944 9.60289 11.09738 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.032279 B = 0.013392 C = 0.011550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.232923 B = 2090.245015 C = 2423.741676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 H 0.087 0.913 4 C -0.024 4.024 5 C 0.023 3.977 6 C -0.199 4.199 7 C 0.059 3.941 8 N -0.311 5.311 9 N -0.374 5.374 10 C 0.110 3.890 11 C 0.086 3.914 12 H 0.038 0.962 13 C -0.498 4.498 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.901 5.901 17 Si 0.872 3.128 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.258 1.258 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.170 0.830 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -3.331 8.680 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 H 0.105 0.895 4 C -0.064 4.064 5 C -0.103 4.103 6 C -0.210 4.210 7 C -0.125 4.125 8 N -0.133 5.133 9 N -0.158 5.158 10 C -0.033 4.033 11 C 0.066 3.934 12 H 0.056 0.944 13 C -0.535 4.535 14 H 0.090 0.910 15 C -0.129 4.129 16 N -0.539 5.539 17 Si 0.700 3.300 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.182 1.182 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.187 0.813 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.445 -4.554 9.091 12.602 hybrid contribution -0.343 0.196 -1.014 1.088 sum -7.788 -4.358 8.077 12.037 Atomic orbital electron populations 1.21786 0.96105 1.01084 1.00666 1.22052 0.93800 0.99702 0.94776 0.89483 1.20642 1.00772 0.87035 0.97909 1.21712 1.04330 0.87789 0.96450 1.21840 1.09010 0.96511 0.93624 1.23215 1.00167 0.91710 0.97454 1.77190 1.26976 1.18075 0.91029 1.47721 1.59090 1.03698 1.05289 1.21621 1.02262 1.01248 0.78137 1.18312 0.96625 0.85491 0.92993 0.94416 1.20871 1.01921 1.36643 0.94089 0.90962 1.25024 0.94906 0.94531 0.98423 1.69906 1.19862 1.47363 1.16724 0.86899 0.81645 0.80344 0.81146 1.20301 1.21622 1.18194 0.93597 0.92668 0.93314 0.92368 0.90396 0.81285 0.91781 0.90426 0.90266 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.14 37.16 0.34 -1.87 16 2 C -0.08 -1.60 3.23 -88.96 -0.29 -1.88 16 3 H 0.09 1.66 7.91 -51.93 -0.41 1.25 16 4 C -0.02 -0.43 6.32 -26.82 -0.17 -0.60 16 5 C 0.02 0.46 7.58 -81.90 -0.62 -0.16 16 6 C -0.20 -4.58 6.19 -104.67 -0.65 -5.22 16 7 C 0.06 1.32 12.03 -17.29 -0.21 1.12 16 8 N -0.31 -6.66 12.57 30.67 0.39 -6.27 16 9 N -0.37 -7.20 4.02 -63.64 -0.26 -7.45 16 10 C 0.11 1.45 11.47 59.85 0.69 2.14 16 11 C 0.09 2.01 1.93 -91.70 -0.18 1.83 16 12 H 0.04 0.89 5.20 -51.93 -0.27 0.62 16 13 C -0.50 -13.76 8.85 -34.44 -0.30 -14.06 16 14 H 0.07 2.17 8.06 -52.48 -0.42 1.74 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 17 Si 0.87 21.38 27.11 -169.99 -4.61 16.77 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 20 H -0.26 -6.01 6.69 56.52 0.38 -5.63 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.84 7.91 -51.93 -0.41 0.43 16 25 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 26 H 0.17 3.51 8.06 -52.49 -0.42 3.09 16 27 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 253.19 15.07 3.82 3.82 Total: -1.00 -32.21 253.19 -5.43 -37.64 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.05 Total: -1.06 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.49 Total: -16.73 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.90 Total: -40.43 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.61 Total: 16.77 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.21 -5.43 -37.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783641.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.766 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds