Wall clock time and date at job start Thu Apr 9 2020 14:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.82002 * 2 1 4 4 C 1.54444 * 110.92176 * 123.67444 * 2 1 3 5 5 C 1.51322 * 104.99266 * 92.48878 * 4 2 1 6 6 C 1.35140 * 110.30619 * 17.06535 * 5 4 2 7 7 C 1.40174 * 107.86209 * 180.27275 * 6 5 4 8 8 N 1.30743 * 108.23890 * 359.77187 * 7 6 5 9 9 N 1.35218 * 141.95030 * 196.91989 * 5 4 2 10 10 C 1.46502 * 126.02885 * 0.04542 * 9 5 4 11 11 C 1.51362 * 110.24899 * 0.15540 * 6 5 4 12 12 H 1.09000 * 110.33250 * 224.41830 * 11 6 5 13 13 C 1.50697 * 110.33642 * 102.17880 * 11 6 5 14 14 H 1.08004 * 120.00021 * 275.40976 * 13 11 6 15 15 C 1.37876 * 120.00315 * 95.41135 * 13 11 6 16 16 N 1.31510 * 120.00110 * 183.65111 * 15 13 11 17 17 Si 1.86801 * 119.99573 * 3.65074 * 15 13 11 18 18 H 1.48494 * 109.47278 * 89.58065 * 17 15 13 19 19 H 1.48499 * 109.47046 * 209.58145 * 17 15 13 20 20 H 1.48499 * 109.47072 * 329.57704 * 17 15 13 21 21 H 1.08994 * 109.46922 * 297.78096 * 1 2 3 22 22 H 1.09003 * 109.46941 * 57.77828 * 1 2 3 23 23 H 1.09002 * 109.47150 * 177.77902 * 1 2 3 24 24 H 1.08994 * 110.33847 * 333.61037 * 4 2 1 25 25 H 1.09001 * 110.41944 * 211.41157 * 4 2 1 26 26 H 1.07994 * 125.87962 * 179.77421 * 7 6 5 27 27 H 1.09008 * 109.47205 * 269.71352 * 10 9 5 28 28 H 1.09000 * 109.47462 * 29.71015 * 10 9 5 29 29 H 1.08999 * 109.47613 * 149.71229 * 10 9 5 30 30 H 0.97000 * 120.00050 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0188 0.0000 4 6 2.0815 -0.7999 1.2005 5 6 2.2806 -2.2054 0.6763 6 6 2.2842 -2.2057 -0.6751 7 6 2.4649 -3.5278 -1.1043 8 7 2.5707 -4.2902 -0.0475 9 7 2.4610 -3.4803 1.0891 10 6 2.5241 -3.9347 2.4805 11 6 2.0916 -0.7990 -1.1998 12 1 1.3711 -0.7953 -2.0177 13 6 3.4080 -0.2259 -1.6574 14 1 4.0696 0.2436 -0.9445 15 6 3.7680 -0.3009 -2.9863 16 7 4.9470 0.1343 -3.3738 17 14 2.5810 -1.0207 -4.2362 18 1 1.7180 0.0593 -4.7784 19 1 3.3474 -1.6452 -5.3442 20 1 1.7338 -2.0485 -3.5796 21 1 -0.3633 0.4790 0.9092 22 1 -0.3633 0.5480 -0.8694 23 1 -0.3633 -1.0269 -0.0398 24 1 1.3617 -0.7993 2.0189 25 1 3.0317 -0.3812 1.5323 26 1 2.5091 -3.8595 -2.1311 27 1 3.5580 -3.9079 2.8249 28 1 1.9162 -3.2797 3.1046 29 1 2.1452 -4.9545 2.5472 30 1 5.2003 0.0812 -4.3086 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259783641.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:24 Heat of formation + Delta-G solvation = 59.139939 kcal Electronic energy + Delta-G solvation = -13590.672596 eV Core-core repulsion = 11386.858606 eV Total energy + Delta-G solvation = -2203.813990 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.35765 -38.02135 -34.53916 -33.93165 -30.87274 -30.13257 -27.20834 -27.12395 -24.64723 -21.73409 -20.47302 -20.29011 -18.96623 -17.38463 -16.50751 -16.01613 -15.21204 -15.06471 -14.69859 -14.41439 -14.19277 -13.55135 -13.41725 -13.32066 -12.99793 -12.70979 -12.32539 -12.25052 -12.06013 -11.71304 -11.51242 -11.16905 -10.96548 -10.64330 -10.01472 -8.87029 -8.23105 -6.23967 1.02235 1.37313 1.40612 1.53133 1.66710 2.05268 2.41743 3.16533 3.57050 3.87438 3.98083 4.30069 4.37649 4.44958 4.56484 4.65166 4.66527 4.78345 4.92021 5.00817 5.05543 5.24579 5.39363 5.45472 5.58154 5.63539 5.79966 5.93463 6.34456 6.39388 6.81596 6.86362 7.41058 8.93655 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.032279 B = 0.013392 C = 0.011550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.232923 B = 2090.245015 C = 2423.741676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 H 0.080 0.920 4 C -0.019 4.019 5 C 0.036 3.964 6 C -0.245 4.245 7 C 0.037 3.963 8 N -0.324 5.324 9 N -0.368 5.368 10 C 0.096 3.904 11 C 0.081 3.919 12 H 0.032 0.968 13 C -0.494 4.494 14 H 0.033 0.967 15 C 0.012 3.988 16 N -0.953 5.953 17 Si 0.934 3.066 18 H -0.265 1.265 19 H -0.293 1.293 20 H -0.241 1.241 21 H 0.080 0.920 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.103 0.897 25 H 0.076 0.924 26 H 0.173 0.827 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.881 -3.903 10.531 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.102 4.102 3 H 0.098 0.902 4 C -0.058 4.058 5 C -0.092 4.092 6 C -0.256 4.256 7 C -0.146 4.146 8 N -0.147 5.147 9 N -0.152 5.152 10 C -0.044 4.044 11 C 0.061 3.939 12 H 0.050 0.950 13 C -0.532 4.532 14 H 0.051 0.949 15 C -0.184 4.184 16 N -0.594 5.594 17 Si 0.759 3.241 18 H -0.190 1.190 19 H -0.220 1.220 20 H -0.165 1.165 21 H 0.099 0.901 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.122 0.878 25 H 0.094 0.906 26 H 0.190 0.810 27 H 0.095 0.905 28 H 0.129 0.871 29 H 0.114 0.886 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.598 -5.148 10.978 15.464 hybrid contribution 0.379 0.370 -1.429 1.524 sum -9.220 -4.779 9.549 14.107 Atomic orbital electron populations 1.21723 0.93228 1.01317 1.02564 1.22014 0.96139 0.98765 0.93321 0.90188 1.20711 1.01891 0.84713 0.98490 1.22130 1.02103 0.89034 0.95917 1.21861 1.12157 0.96330 0.95279 1.23382 1.01098 0.91988 0.98174 1.77121 1.27331 1.18631 0.91592 1.48184 1.57084 1.03193 1.06779 1.22129 1.04039 1.03036 0.75199 1.18294 0.94109 0.86648 0.94830 0.94957 1.21155 1.03164 1.35492 0.93340 0.94914 1.25871 0.96474 0.95332 1.00736 1.70060 1.22191 1.50007 1.17133 0.85902 0.79649 0.80211 0.78366 1.19042 1.21962 1.16458 0.90126 0.92603 0.93673 0.87840 0.90571 0.81000 0.90503 0.87088 0.88620 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.14 71.98 0.66 -3.05 16 2 C -0.08 -2.99 3.23 -9.72 -0.03 -3.02 16 3 H 0.08 2.96 7.91 -2.39 -0.02 2.94 16 4 C -0.02 -0.61 6.32 30.54 0.19 -0.42 16 5 C 0.04 1.38 7.58 41.52 0.31 1.69 16 6 C -0.25 -11.07 6.19 -19.90 -0.12 -11.19 16 7 C 0.04 1.64 12.03 85.33 1.03 2.67 16 8 N -0.32 -13.44 12.57 -56.87 -0.71 -14.16 16 9 N -0.37 -13.21 4.02 -355.25 -1.43 -14.63 16 10 C 0.10 2.16 11.47 127.77 1.47 3.62 16 11 C 0.08 3.76 1.93 -11.49 -0.02 3.73 16 12 H 0.03 1.50 5.20 -2.39 -0.01 1.49 16 13 C -0.49 -28.01 8.85 25.60 0.23 -27.78 16 14 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 15 C 0.01 0.72 5.47 84.66 0.46 1.18 16 16 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 17 Si 0.93 44.86 27.11 68.60 1.86 46.72 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 20 H -0.24 -10.83 6.69 99.48 0.67 -10.16 16 21 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.10 2.41 7.91 -2.39 -0.02 2.40 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.17 7.18 8.06 -2.91 -0.02 7.16 16 27 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -71.81 253.19 5.26 -66.54 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.08 Total: 8.17 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 4.17 Total: -32.56 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -1.84 Total: -88.87 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.86 Total: 46.72 kcal Total: -71.81 5.26 -66.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783641.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.683 kcal (2) G-P(sol) polarization free energy of solvation -71.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds