Wall clock time and date at job start Thu Apr 9 2020 14:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37541 * 126.55160 * 2 1 4 4 C 1.40001 * 125.96830 * 359.96438 * 3 2 1 5 5 H 1.08002 * 119.99555 * 359.97438 * 4 3 2 6 6 C 1.40230 * 119.99987 * 180.27712 * 4 3 2 7 7 N 1.30694 * 120.00446 * 359.71987 * 6 4 3 8 8 Si 1.86801 * 119.99832 * 179.72113 * 6 4 3 9 9 H 1.48496 * 109.47377 * 60.00035 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99648 * 8 6 4 12 12 N 1.32983 * 108.07182 * 180.22332 * 3 2 1 13 13 C 1.32758 * 109.22287 * 359.56791 * 12 3 2 14 14 C 1.36224 * 108.61952 * 0.43027 * 13 12 3 15 15 C 1.50698 * 126.40289 * 179.73537 * 14 13 12 16 16 C 1.53780 * 113.61476 * 62.50108 * 15 14 13 17 17 C 1.53778 * 87.08269 * 220.01832 * 16 15 14 18 18 C 1.53783 * 113.61429 * 325.00339 * 15 14 13 19 19 H 1.09000 * 109.47195 * 90.02511 * 1 2 3 20 20 H 1.09005 * 109.47205 * 210.02675 * 1 2 3 21 21 H 1.09003 * 109.47634 * 330.02756 * 1 2 3 22 22 H 0.96995 * 120.00259 * 180.02562 * 7 6 4 23 23 H 1.08001 * 125.69326 * 180.21117 * 13 12 3 24 24 H 1.09003 * 112.85050 * 193.81066 * 15 14 13 25 25 H 1.08997 * 113.61448 * 334.56512 * 16 15 14 26 26 H 1.09000 * 113.61200 * 105.46908 * 16 15 14 27 27 H 1.09003 * 113.61504 * 270.88297 * 17 16 15 28 28 H 1.09001 * 113.69173 * 139.99320 * 17 16 15 29 29 H 1.09001 * 113.61625 * 254.52972 * 18 15 14 30 30 H 1.09000 * 113.61583 * 25.43480 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2841 1.1049 0.0000 4 6 1.8636 2.4403 -0.0007 5 1 0.8092 2.6743 -0.0017 6 6 2.8113 3.4738 -0.0065 7 7 4.0872 3.1906 -0.0057 8 14 2.2502 5.2555 -0.0153 9 1 1.4344 5.5236 1.1962 10 1 3.4369 6.1482 -0.0199 11 1 1.4332 5.5112 -1.2287 12 7 3.5454 0.6834 -0.0049 13 6 3.5626 -0.6441 0.0014 14 6 2.2775 -1.0957 0.0010 15 6 1.8359 -2.5366 0.0013 16 6 2.2769 -3.3157 1.2516 17 6 2.5686 -4.4997 0.3147 18 6 2.7594 -3.4641 -0.8060 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3634 -0.8898 0.5143 21 1 -0.3634 0.8902 0.5134 22 1 4.7427 3.9055 -0.0093 23 1 4.4479 -1.2627 0.0027 24 1 0.7793 -2.6556 -0.2389 25 1 3.1674 -2.9072 1.7292 26 1 1.4669 -3.5056 1.9560 27 1 1.7122 -5.1564 0.1613 28 1 3.4791 -5.0434 0.5664 29 1 2.3390 -3.7737 -1.7629 30 1 3.7818 -3.0961 -0.8910 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260170561.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:34 Heat of formation + Delta-G solvation = 69.070314 kcal Electronic energy + Delta-G solvation = -13268.374400 eV Core-core repulsion = 11064.991023 eV Total energy + Delta-G solvation = -2203.383376 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.06752 -37.74121 -33.27854 -32.28421 -28.96001 -26.35109 -25.42905 -25.14094 -23.23167 -20.29524 -19.30183 -18.00399 -16.54048 -15.69348 -15.06645 -14.55386 -14.12539 -13.67237 -13.10899 -12.45529 -12.05975 -11.98278 -11.61902 -11.52071 -11.44213 -11.26955 -11.02039 -10.49637 -10.24952 -10.05106 -9.97682 -9.86153 -9.10147 -7.84579 -7.70025 -6.86243 -6.34036 -4.18927 3.08851 3.18022 3.19425 3.62814 4.05624 4.48269 4.72457 5.12254 5.15025 5.19515 5.56755 5.70320 5.74897 5.92318 5.96748 6.09836 6.20073 6.20772 6.23802 6.28973 6.36660 6.60188 6.64680 6.84476 7.22956 7.40749 7.71330 8.20661 8.29946 8.64775 9.02751 9.39982 10.31432 10.59342 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.066292 B = 0.008435 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.269688 B = 3318.889199 C = 3602.192391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.508 5.508 3 C 0.375 3.625 4 C -0.464 4.464 5 H 0.076 0.924 6 C 0.082 3.918 7 N -0.744 5.744 8 Si 0.910 3.090 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.268 1.268 12 N -0.517 5.517 13 C -0.004 4.004 14 C -0.135 4.135 15 C -0.011 4.011 16 C -0.132 4.132 17 C -0.145 4.145 18 C -0.128 4.128 19 H 0.047 0.953 20 H 0.056 0.944 21 H 0.071 0.929 22 H 0.272 0.728 23 H 0.130 0.870 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 -7.433 0.319 8.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.198 5.198 3 C 0.133 3.867 4 C -0.504 4.504 5 H 0.094 0.906 6 C -0.141 4.141 7 N -0.369 5.369 8 Si 0.734 3.266 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.193 1.193 12 N -0.237 5.237 13 C -0.158 4.158 14 C -0.246 4.246 15 C -0.031 4.031 16 C -0.169 4.169 17 C -0.183 4.183 18 C -0.166 4.166 19 H 0.065 0.935 20 H 0.075 0.925 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.147 0.853 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.086 -6.896 0.311 8.021 hybrid contribution -1.071 0.244 -0.019 1.099 sum -5.157 -6.651 0.291 8.421 Atomic orbital electron populations 1.21395 0.80526 1.01839 1.00706 1.45171 1.04689 1.06714 1.63231 1.20194 0.83551 0.87379 0.95623 1.18059 0.93932 0.87093 1.51270 0.90621 1.25680 0.94420 1.00408 0.93608 1.70008 1.00910 1.33541 1.32435 0.86381 0.78829 0.81909 0.79444 1.19301 1.20378 1.19297 1.71282 1.17552 1.07170 1.27698 1.21809 0.93353 0.93588 1.07014 1.20241 0.91692 0.87242 1.25414 1.20421 0.97606 0.89216 0.95839 1.23046 1.01340 0.96045 0.96506 1.22823 1.00962 0.96406 0.98067 1.22982 1.00849 0.96057 0.96717 0.93492 0.92495 0.91021 0.91753 0.85270 0.90923 0.89927 0.92606 0.90975 0.91940 0.92374 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.91 10.65 59.85 0.64 2.55 16 2 N -0.51 -12.48 3.21 -118.76 -0.38 -12.86 16 3 C 0.38 10.74 7.43 -155.60 -1.16 9.58 16 4 C -0.46 -12.92 9.00 -38.17 -0.34 -13.27 16 5 H 0.08 1.94 7.16 -52.49 -0.38 1.56 16 6 C 0.08 2.21 5.50 -17.29 -0.10 2.12 16 7 N -0.74 -21.28 11.90 55.56 0.66 -20.62 16 8 Si 0.91 19.52 29.56 -169.99 -5.03 14.49 16 9 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 12 N -0.52 -15.40 9.40 -12.72 -0.12 -15.52 16 13 C 0.00 -0.11 11.00 -17.88 -0.20 -0.31 16 14 C -0.13 -3.12 6.23 -81.28 -0.51 -3.63 16 15 C -0.01 -0.20 3.94 -90.96 -0.36 -0.56 16 16 C -0.13 -2.07 7.62 -25.92 -0.20 -2.27 16 17 C -0.15 -1.93 8.08 -25.92 -0.21 -2.14 16 18 C -0.13 -2.00 7.56 -25.92 -0.20 -2.20 16 19 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 20 H 0.06 0.94 7.50 -51.93 -0.39 0.55 16 21 H 0.07 1.32 7.38 -51.93 -0.38 0.94 16 22 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 23 H 0.13 2.99 7.42 -52.49 -0.39 2.60 16 24 H 0.07 1.23 7.45 -51.93 -0.39 0.85 16 25 H 0.08 1.40 8.04 -51.93 -0.42 0.99 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.39 6.94 -51.93 -0.36 1.03 16 LS Contribution 253.29 15.07 3.82 3.82 Total: -1.00 -31.85 253.29 -7.62 -39.47 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -3.95 Total: 1.33 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.62 Total: -10.11 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.16 Total: -48.99 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.85 -7.62 -39.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260170561.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.537 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds