Wall clock time and date at job start Thu Apr 9 2020 14:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37541 * 126.55160 * 2 1 4 4 C 1.40001 * 125.96830 * 359.96438 * 3 2 1 5 5 H 1.08002 * 119.99555 * 359.97438 * 4 3 2 6 6 C 1.40230 * 119.99987 * 180.27712 * 4 3 2 7 7 N 1.30694 * 120.00446 * 359.71987 * 6 4 3 8 8 Si 1.86801 * 119.99832 * 179.72113 * 6 4 3 9 9 H 1.48496 * 109.47377 * 60.00035 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99648 * 8 6 4 12 12 N 1.32983 * 108.07182 * 180.22332 * 3 2 1 13 13 C 1.32758 * 109.22287 * 359.56791 * 12 3 2 14 14 C 1.36224 * 108.61952 * 0.43027 * 13 12 3 15 15 C 1.50698 * 126.40289 * 179.73537 * 14 13 12 16 16 C 1.53780 * 113.61476 * 62.50108 * 15 14 13 17 17 C 1.53778 * 87.08269 * 220.01832 * 16 15 14 18 18 C 1.53783 * 113.61429 * 325.00339 * 15 14 13 19 19 H 1.09000 * 109.47195 * 90.02511 * 1 2 3 20 20 H 1.09005 * 109.47205 * 210.02675 * 1 2 3 21 21 H 1.09003 * 109.47634 * 330.02756 * 1 2 3 22 22 H 0.96995 * 120.00259 * 180.02562 * 7 6 4 23 23 H 1.08001 * 125.69326 * 180.21117 * 13 12 3 24 24 H 1.09003 * 112.85050 * 193.81066 * 15 14 13 25 25 H 1.08997 * 113.61448 * 334.56512 * 16 15 14 26 26 H 1.09000 * 113.61200 * 105.46908 * 16 15 14 27 27 H 1.09003 * 113.61504 * 270.88297 * 17 16 15 28 28 H 1.09001 * 113.69173 * 139.99320 * 17 16 15 29 29 H 1.09001 * 113.61625 * 254.52972 * 18 15 14 30 30 H 1.09000 * 113.61583 * 25.43480 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2841 1.1049 0.0000 4 6 1.8636 2.4403 -0.0007 5 1 0.8092 2.6743 -0.0017 6 6 2.8113 3.4738 -0.0065 7 7 4.0872 3.1906 -0.0057 8 14 2.2502 5.2555 -0.0153 9 1 1.4344 5.5236 1.1962 10 1 3.4369 6.1482 -0.0199 11 1 1.4332 5.5112 -1.2287 12 7 3.5454 0.6834 -0.0049 13 6 3.5626 -0.6441 0.0014 14 6 2.2775 -1.0957 0.0010 15 6 1.8359 -2.5366 0.0013 16 6 2.2769 -3.3157 1.2516 17 6 2.5686 -4.4997 0.3147 18 6 2.7594 -3.4641 -0.8060 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3634 -0.8898 0.5143 21 1 -0.3634 0.8902 0.5134 22 1 4.7427 3.9055 -0.0093 23 1 4.4479 -1.2627 0.0027 24 1 0.7793 -2.6556 -0.2389 25 1 3.1674 -2.9072 1.7292 26 1 1.4669 -3.5056 1.9560 27 1 1.7122 -5.1564 0.1613 28 1 3.4791 -5.0434 0.5664 29 1 2.3390 -3.7737 -1.7629 30 1 3.7818 -3.0961 -0.8910 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260170561.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:34 Heat of formation + Delta-G solvation = 49.869737 kcal Electronic energy + Delta-G solvation = -13269.206999 eV Core-core repulsion = 11064.991023 eV Total energy + Delta-G solvation = -2204.215976 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.94735 -39.11068 -35.25715 -34.15542 -30.84460 -28.11941 -27.11869 -26.39624 -24.93394 -22.11969 -20.95567 -19.61775 -18.43768 -17.49500 -16.66194 -15.99850 -15.88254 -15.27237 -14.72199 -14.31287 -13.55903 -13.34659 -13.28607 -13.14622 -13.04106 -12.81942 -12.65236 -12.34349 -11.98702 -11.47722 -11.27871 -11.17952 -10.98267 -9.80433 -9.73134 -8.84872 -8.31241 -6.24113 1.37502 1.42669 1.56448 1.79471 2.26862 2.70643 2.74693 3.63933 3.88839 3.91678 3.94203 4.21645 4.25897 4.55229 4.58562 4.60520 4.73590 4.78005 4.91097 4.98168 5.12790 5.13726 5.21816 5.33690 5.44367 5.66294 5.80729 6.26551 6.31259 6.71435 7.02847 7.42463 8.31949 8.65291 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.066292 B = 0.008435 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.269688 B = 3318.889199 C = 3602.192391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.513 5.513 3 C 0.334 3.666 4 C -0.495 4.495 5 H 0.089 0.911 6 C 0.029 3.971 7 N -0.796 5.796 8 Si 0.995 3.005 9 H -0.258 1.258 10 H -0.274 1.274 11 H -0.258 1.258 12 N -0.564 5.564 13 C -0.055 4.055 14 C -0.101 4.101 15 C -0.025 4.025 16 C -0.130 4.130 17 C -0.122 4.122 18 C -0.129 4.129 19 H 0.063 0.937 20 H 0.089 0.911 21 H 0.074 0.926 22 H 0.275 0.725 23 H 0.139 0.861 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 -8.649 0.342 11.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.202 5.202 3 C 0.089 3.911 4 C -0.535 4.535 5 H 0.107 0.893 6 C -0.189 4.189 7 N -0.423 5.423 8 Si 0.815 3.185 9 H -0.182 1.182 10 H -0.198 1.198 11 H -0.182 1.182 12 N -0.286 5.286 13 C -0.205 4.205 14 C -0.214 4.214 15 C -0.045 4.045 16 C -0.168 4.168 17 C -0.159 4.159 18 C -0.167 4.167 19 H 0.082 0.918 20 H 0.107 0.893 21 H 0.093 0.907 22 H 0.085 0.915 23 H 0.156 0.844 24 H 0.111 0.889 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.169 -8.152 0.334 10.229 hybrid contribution -0.479 0.437 -0.029 0.649 sum -6.648 -7.715 0.305 10.189 Atomic orbital electron populations 1.21718 0.77357 1.03630 1.02339 1.45540 1.06843 1.06067 1.61731 1.20530 0.84159 0.88802 0.97616 1.18515 0.94894 0.87611 1.52465 0.89334 1.26786 0.94176 1.05514 0.92417 1.70169 1.02505 1.35309 1.34293 0.85099 0.78460 0.75012 0.79958 1.18183 1.19818 1.18227 1.71120 1.19315 1.09336 1.28839 1.22102 0.95268 0.92857 1.10298 1.21092 0.90845 0.89419 1.20049 1.20811 0.99231 0.85898 0.98546 1.22970 1.01019 0.96664 0.96157 1.22754 1.02755 0.95425 0.94954 1.22955 0.99386 0.96202 0.98172 0.91815 0.89275 0.90715 0.91531 0.84354 0.88923 0.91960 0.90911 0.88245 0.90474 0.90875 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.34 10.65 127.77 1.36 4.70 16 2 N -0.51 -25.10 3.21 -529.63 -1.70 -26.80 16 3 C 0.33 19.69 7.43 133.59 0.99 20.68 16 4 C -0.50 -28.23 9.00 23.18 0.21 -28.02 16 5 H 0.09 4.57 7.16 -2.91 -0.02 4.55 16 6 C 0.03 1.62 5.50 85.35 0.47 2.09 16 7 N -0.80 -47.49 11.90 21.88 0.26 -47.23 16 8 Si 0.99 40.58 29.56 68.60 2.03 42.61 16 9 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 10 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 11 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 12 N -0.56 -35.19 9.40 -194.16 -1.83 -37.02 16 13 C -0.05 -2.91 11.00 84.08 0.92 -1.98 16 14 C -0.10 -4.66 6.23 41.38 0.26 -4.41 16 15 C -0.03 -0.84 3.94 -11.01 -0.04 -0.89 16 16 C -0.13 -3.73 7.62 31.12 0.24 -3.50 16 17 C -0.12 -2.74 8.08 31.12 0.25 -2.49 16 18 C -0.13 -3.70 7.56 31.12 0.24 -3.47 16 19 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 20 H 0.09 2.63 7.50 -2.38 -0.02 2.61 16 21 H 0.07 2.65 7.38 -2.39 -0.02 2.63 16 22 H 0.27 14.93 8.29 -92.71 -0.77 14.16 16 23 H 0.14 6.74 7.42 -2.91 -0.02 6.72 16 24 H 0.09 2.76 7.45 -2.39 -0.02 2.74 16 25 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 2.17 6.94 -2.39 -0.02 2.16 16 Total: -1.00 -72.42 253.29 4.78 -67.64 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 1.12 Total: 18.07 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 4.89 Total: -17.27 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -3.27 Total: -111.05 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -72.42 4.78 -67.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260170561.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.508 kcal (2) G-P(sol) polarization free energy of solvation -72.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds