Wall clock time and date at job start Thu Apr 9 2020 14:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40016 * 126.03058 * 2 1 4 4 C 1.31037 * 108.24630 * 179.97438 * 3 2 1 5 5 C 1.39856 * 108.13096 * 0.02562 * 4 3 2 6 6 C 1.34889 * 126.03046 * 179.97438 * 2 1 3 7 7 C 1.50701 * 126.11264 * 0.05780 * 6 2 1 8 8 C 1.50699 * 109.46881 * 89.95806 * 7 6 2 9 9 H 1.07996 * 120.00454 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99908 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99608 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00122 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46744 * 59.99855 * 12 10 8 14 14 H 1.48494 * 109.47024 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46966 * 299.99981 * 12 10 8 16 16 C 1.51283 * 109.55677 * 179.97438 * 5 4 3 17 17 C 1.54343 * 105.21544 * 342.78022 * 16 5 4 18 18 C 1.51616 * 142.28569 * 179.74541 * 4 3 2 19 19 H 1.09000 * 109.47164 * 90.02372 * 1 2 3 20 20 H 1.08999 * 109.47583 * 210.02499 * 1 2 3 21 21 H 1.09006 * 109.47239 * 330.02756 * 1 2 3 22 22 H 1.09000 * 109.47051 * 209.95703 * 7 6 2 23 23 H 1.08995 * 109.47121 * 329.95883 * 7 6 2 24 24 H 0.96996 * 119.99595 * 180.02562 * 11 10 8 25 25 H 1.09003 * 110.29639 * 223.84687 * 16 5 4 26 26 H 1.09003 * 110.37805 * 101.76022 * 16 5 4 27 27 H 1.09002 * 110.77143 * 144.82905 * 17 16 5 28 28 H 1.09004 * 110.76966 * 268.05221 * 17 16 5 29 29 H 1.09003 * 110.24816 * 78.39409 * 18 4 3 30 30 H 1.08998 * 110.47281 * 316.18159 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2886 1.1323 0.0000 4 6 3.5363 0.7321 0.0006 5 6 3.5448 -0.6664 0.0003 6 6 2.2584 -1.0909 0.0005 7 6 1.7963 -2.5253 -0.0001 8 6 1.6425 -3.0028 -1.4211 9 1 1.8574 -2.3344 -2.2417 10 6 1.2273 -4.2932 -1.6736 11 7 0.9652 -5.1070 -0.6743 12 14 1.0359 -4.8850 -3.4350 13 1 2.3415 -4.7845 -4.1355 14 1 0.5819 -6.2988 -3.4356 15 1 0.0329 -4.0421 -4.1341 16 6 4.9734 -1.1642 0.0003 17 6 5.8240 0.0459 -0.4403 18 6 4.9617 1.2489 -0.0032 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3634 -0.8897 0.5142 21 1 -0.3634 0.8903 0.5134 22 1 2.5320 -3.1442 0.5136 23 1 0.8378 -2.5984 0.5136 24 1 0.6735 -6.0148 -0.8519 25 1 5.0879 -1.9848 -0.7080 26 1 5.2633 -1.4859 1.0007 27 1 6.7846 0.0513 0.0748 28 1 5.9666 0.0452 -1.5210 29 1 5.2472 1.5754 0.9968 30 1 5.0682 2.0683 -0.7140 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260172637.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:35 Heat of formation + Delta-G solvation = 46.497346 kcal Electronic energy + Delta-G solvation = -13248.831685 eV Core-core repulsion = 11044.469472 eV Total energy + Delta-G solvation = -2204.362214 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.33339 -37.34248 -35.49930 -33.18816 -32.19428 -29.45249 -27.52337 -26.95656 -25.09413 -22.20181 -20.52494 -19.88454 -18.60352 -17.12348 -16.67931 -16.31691 -15.61610 -15.12068 -14.85358 -14.37294 -13.68425 -13.66534 -13.44128 -13.24802 -13.19801 -12.70304 -12.58909 -12.43339 -11.92924 -11.77341 -11.72638 -11.58201 -11.17265 -10.64147 -9.86652 -8.99635 -8.25717 -6.39537 1.05657 1.38786 1.40234 1.49088 1.68848 1.91190 2.38407 3.05559 3.23339 3.95142 4.13053 4.27343 4.31281 4.38116 4.46109 4.58371 4.63084 4.84073 4.94602 5.04324 5.08784 5.19918 5.31055 5.32387 5.47188 5.62927 5.67514 5.90480 6.01256 6.31369 6.68320 6.93781 7.29198 8.83157 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.033852 B = 0.010239 C = 0.008845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.928355 B = 2734.065290 C = 3164.929216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.385 5.385 3 N -0.328 5.328 4 C 0.035 3.965 5 C -0.307 4.307 6 C 0.120 3.880 7 C 0.090 3.910 8 C -0.529 4.529 9 H 0.045 0.955 10 C 0.016 3.984 11 N -0.922 5.922 12 Si 0.963 3.037 13 H -0.270 1.270 14 H -0.276 1.276 15 H -0.270 1.270 16 C -0.038 4.038 17 C -0.103 4.103 18 C -0.021 4.021 19 H 0.072 0.928 20 H 0.086 0.914 21 H 0.104 0.896 22 H 0.021 0.979 23 H 0.015 0.985 24 H 0.269 0.731 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.793 8.662 0.760 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.167 5.167 3 N -0.150 5.150 4 C -0.131 4.131 5 C -0.318 4.318 6 C -0.008 4.008 7 C 0.051 3.949 8 C -0.567 4.567 9 H 0.063 0.937 10 C -0.184 4.184 11 N -0.561 5.561 12 Si 0.788 3.212 13 H -0.195 1.195 14 H -0.201 1.201 15 H -0.195 1.195 16 C -0.076 4.076 17 C -0.140 4.140 18 C -0.060 4.060 19 H 0.091 0.909 20 H 0.105 0.895 21 H 0.123 0.877 22 H 0.039 0.961 23 H 0.033 0.967 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.132 0.868 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.750 9.506 0.812 10.657 hybrid contribution -0.270 -1.416 -0.712 1.608 sum 4.480 8.089 0.100 9.248 Atomic orbital electron populations 1.21889 0.73148 1.04681 1.03679 1.48649 1.07209 1.02426 1.58432 1.76760 1.01266 1.08062 1.28878 1.24033 0.95035 0.95374 0.98693 1.21008 0.95436 0.95660 1.19675 1.21077 0.91035 0.91400 0.97247 1.17679 0.95698 0.84293 0.97218 1.21056 1.46467 0.97608 0.91569 0.93706 1.25789 0.94428 0.96446 1.01691 1.70035 1.45892 1.07212 1.32954 0.85526 0.78880 0.77490 0.79349 1.19517 1.20093 1.19487 1.20361 0.87700 0.98469 1.01093 1.22350 0.98338 0.91398 1.01945 1.20708 0.82692 0.98770 1.03836 0.90920 0.89531 0.87718 0.96077 0.96676 0.92223 0.92988 0.90938 0.86837 0.90856 0.87797 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.76 11.27 127.77 1.44 5.20 16 2 N -0.39 -17.01 4.01 -355.95 -1.43 -18.44 16 3 N -0.33 -14.07 12.58 -46.57 -0.59 -14.66 16 4 C 0.04 1.38 8.11 43.36 0.35 1.73 16 5 C -0.31 -13.32 6.78 -19.93 -0.14 -13.46 16 6 C 0.12 5.77 6.12 41.45 0.25 6.03 16 7 C 0.09 4.82 5.21 29.10 0.15 4.97 16 8 C -0.53 -30.02 9.09 25.60 0.23 -29.79 16 9 H 0.04 2.59 7.74 -2.91 -0.02 2.57 16 10 C 0.02 0.89 5.46 84.66 0.46 1.36 16 11 N -0.92 -53.65 13.29 21.45 0.28 -53.36 16 12 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 16 C -0.04 -1.30 6.77 30.49 0.21 -1.10 16 17 C -0.10 -2.49 7.04 31.50 0.22 -2.27 16 18 C -0.02 -0.55 6.79 30.59 0.21 -0.34 16 19 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 20 H 0.09 3.04 7.05 -2.39 -0.02 3.03 16 21 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 22 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.02 0.83 7.08 -2.39 -0.02 0.81 16 24 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 25 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -68.04 256.83 4.81 -63.23 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.12 Total: 5.34 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 3.39 Total: -27.68 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -1.73 Total: -86.46 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -68.04 4.81 -63.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260172637.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.723 kcal (2) G-P(sol) polarization free energy of solvation -68.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds