Wall clock time and date at job start Thu Apr 9 2020 14:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32754 * 125.68692 * 2 1 4 4 C 1.32981 * 109.22603 * 179.97438 * 3 2 1 5 5 C 1.40000 * 125.96920 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00167 * 186.28994 * 5 4 3 7 7 C 1.40239 * 119.99468 * 6.29308 * 5 4 3 8 8 N 1.30686 * 120.00125 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99841 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47199 * 89.99736 * 9 7 5 11 11 H 1.48500 * 109.47039 * 209.99629 * 9 7 5 12 12 H 1.48505 * 109.47341 * 329.99482 * 9 7 5 13 13 N 1.37542 * 108.07277 * 0.02562 * 4 3 2 14 14 C 1.46501 * 126.55775 * 179.97438 * 13 4 3 15 15 C 1.52994 * 117.49754 * 63.84788 * 14 13 4 16 16 C 1.53004 * 60.03488 * 107.47777 * 15 14 13 17 17 C 1.36213 * 125.69159 * 180.29732 * 2 1 3 18 18 C 1.50699 * 126.40724 * 0.02562 * 17 2 1 19 19 H 1.08993 * 109.47497 * 90.02178 * 1 2 3 20 20 H 1.09007 * 109.46621 * 210.01718 * 1 2 3 21 21 H 1.09001 * 109.46853 * 330.01206 * 1 2 3 22 22 H 0.97004 * 120.00087 * 180.02562 * 8 7 5 23 23 H 1.08996 * 115.55035 * 278.17210 * 14 13 4 24 24 H 1.09004 * 117.49803 * 214.97332 * 15 14 13 25 25 H 1.08995 * 117.50343 * 359.97438 * 15 14 13 26 26 H 1.09000 * 117.49901 * 107.49895 * 16 15 14 27 27 H 1.08996 * 117.49623 * 252.52127 * 16 15 14 28 28 H 1.09006 * 109.47306 * 270.19390 * 18 17 2 29 29 H 1.09002 * 109.47043 * 30.18840 * 18 17 2 30 30 H 1.09003 * 109.47547 * 150.18823 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2815 1.0782 0.0000 4 6 3.5568 0.7014 0.0006 5 6 4.6664 1.5551 0.0002 6 1 5.6613 1.1474 -0.1017 7 6 4.4860 2.9395 0.1324 8 7 3.2821 3.4328 0.2553 9 14 5.9664 4.0786 0.1312 10 1 6.2649 4.5010 -1.2608 11 1 5.6707 5.2755 0.9591 12 1 7.1406 3.3650 0.6946 13 7 3.5955 -0.6734 0.0003 14 6 4.7963 -1.5126 0.0003 15 6 5.7179 -1.4271 1.2185 16 6 4.8505 -2.6688 1.0020 17 6 2.3017 -1.1063 -0.0057 18 6 1.8385 -2.5403 -0.0137 19 1 -0.3634 -0.0004 -1.0276 20 1 -0.3633 -0.8899 0.5141 21 1 -0.3633 0.8901 0.5137 22 1 3.1572 4.3904 0.3463 23 1 5.2618 -1.6672 -0.9731 24 1 6.7898 -1.5258 1.0466 25 1 5.4311 -0.7463 2.0198 26 1 5.3518 -3.5843 0.6877 27 1 3.9928 -2.8046 1.6607 28 1 1.7232 -2.8906 1.0120 29 1 0.8817 -2.6101 -0.5312 30 1 2.5755 -3.1574 -0.5277 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260173970.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:36 Heat of formation + Delta-G solvation = 53.043309 kcal Electronic energy + Delta-G solvation = -13472.952448 eV Core-core repulsion = 11268.874088 eV Total energy + Delta-G solvation = -2204.078360 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.93450 -37.84316 -35.39210 -33.01182 -32.44095 -29.00493 -28.93437 -24.67969 -23.59038 -23.21236 -20.98008 -19.65774 -18.65931 -17.46840 -16.59537 -16.12138 -15.15786 -14.96882 -14.28591 -14.09490 -13.72409 -13.57560 -13.33637 -13.03033 -12.85264 -12.77330 -12.57846 -12.38453 -12.22248 -11.91831 -11.56760 -11.25971 -11.00773 -9.68293 -9.66077 -8.72353 -8.30490 -6.20433 1.34973 1.41181 1.55871 1.78747 2.25564 2.57219 2.72473 2.77213 3.61993 3.82704 3.95616 4.07941 4.41240 4.54717 4.60881 4.68499 4.79107 4.86355 4.89922 5.01460 5.03686 5.14544 5.18510 5.21243 5.29458 5.57106 5.84912 6.30087 6.36865 6.77914 7.06622 7.47969 8.36084 8.66362 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.029925 B = 0.013406 C = 0.009547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.462457 B = 2088.140792 C = 2932.190928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.045 4.045 3 N -0.561 5.561 4 C 0.341 3.659 5 C -0.485 4.485 6 H 0.085 0.915 7 C 0.030 3.970 8 N -0.798 5.798 9 Si 0.990 3.010 10 H -0.266 1.266 11 H -0.273 1.273 12 H -0.252 1.252 13 N -0.481 5.481 14 C 0.046 3.954 15 C -0.167 4.167 16 C -0.145 4.145 17 C -0.129 4.129 18 C -0.040 4.040 19 H 0.059 0.941 20 H 0.079 0.921 21 H 0.042 0.958 22 H 0.273 0.727 23 H 0.118 0.882 24 H 0.129 0.871 25 H 0.070 0.930 26 H 0.140 0.860 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 -9.628 0.754 10.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.177 4.177 3 N -0.283 5.283 4 C 0.096 3.904 5 C -0.524 4.524 6 H 0.103 0.897 7 C -0.188 4.188 8 N -0.424 5.424 9 Si 0.811 3.189 10 H -0.190 1.190 11 H -0.198 1.198 12 H -0.176 1.176 13 N -0.170 5.170 14 C -0.058 4.058 15 C -0.204 4.204 16 C -0.182 4.182 17 C -0.241 4.241 18 C -0.097 4.097 19 H 0.077 0.923 20 H 0.098 0.902 21 H 0.062 0.938 22 H 0.083 0.917 23 H 0.135 0.865 24 H 0.147 0.853 25 H 0.088 0.912 26 H 0.158 0.842 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.183 -8.787 0.783 9.378 hybrid contribution 0.617 0.198 -0.052 0.650 sum 3.799 -8.589 0.730 9.420 Atomic orbital electron populations 1.19835 0.88046 1.01322 1.01014 1.21282 0.97135 0.90048 1.09187 1.71061 1.00282 1.27815 1.29164 1.20494 0.93295 0.79351 0.97277 1.18456 0.91616 0.91165 1.51207 0.89669 1.26753 0.99673 0.99837 0.92553 1.70171 1.24318 1.13597 1.34336 0.85106 0.77760 0.77077 0.78987 1.19047 1.19809 1.17567 1.44967 1.04463 1.05987 1.61608 1.21704 0.89392 0.98662 0.96085 1.23197 0.98544 1.00435 0.98265 1.23341 1.01916 0.93021 0.99901 1.21090 0.83973 0.97242 1.21799 1.19898 1.00762 0.87789 1.01296 0.92266 0.90204 0.93844 0.91675 0.86455 0.85284 0.91164 0.84221 0.89352 0.92171 0.90698 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.85 10.05 71.24 0.72 -1.13 16 2 C -0.04 -2.36 7.07 41.95 0.30 -2.06 16 3 N -0.56 -34.85 9.43 -182.22 -1.72 -36.57 16 4 C 0.34 20.15 7.41 133.59 0.99 21.14 16 5 C -0.48 -27.79 9.03 23.18 0.21 -27.58 16 6 H 0.09 4.51 7.63 -2.91 -0.02 4.49 16 7 C 0.03 1.65 5.50 85.35 0.47 2.12 16 8 N -0.80 -47.75 11.92 21.88 0.26 -47.49 16 9 Si 0.99 41.08 29.56 68.60 2.03 43.11 16 10 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 11 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 12 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 13 N -0.48 -23.72 3.09 -483.96 -1.50 -25.22 16 14 C 0.05 1.73 5.88 45.02 0.26 1.99 16 15 C -0.17 -5.43 10.37 30.59 0.32 -5.11 16 16 C -0.14 -4.02 9.31 30.62 0.29 -3.74 16 17 C -0.13 -6.04 6.87 41.37 0.28 -5.75 16 18 C -0.04 -1.31 8.71 71.24 0.62 -0.69 16 19 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 20 H 0.08 2.71 7.81 -2.38 -0.02 2.69 16 21 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.27 14.93 8.29 -92.71 -0.77 14.16 16 23 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 24 H 0.13 3.31 8.14 -2.38 -0.02 3.29 16 25 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 26 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.09 2.65 7.56 -2.39 -0.02 2.63 16 28 H 0.06 1.81 8.05 -2.38 -0.02 1.79 16 29 H 0.07 2.22 7.82 -2.39 -0.02 2.20 16 30 H 0.06 1.84 7.61 -2.39 -0.02 1.82 16 Total: -1.00 -74.21 259.15 4.65 -69.57 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 1.12 Total: 17.41 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 4.45 Total: -20.81 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -2.96 Total: -109.28 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -74.21 4.65 -69.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173970.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.610 kcal (2) G-P(sol) polarization free energy of solvation -74.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds