Wall clock time and date at job start Thu Apr 9 2020 14:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47169 * 2 1 4 4 C 1.46902 * 110.99939 * 174.53528 * 3 2 1 5 5 H 1.09003 * 109.47098 * 318.08544 * 4 3 2 6 6 C 1.50699 * 109.47230 * 198.08655 * 4 3 2 7 7 H 1.07999 * 119.99771 * 245.21845 * 6 4 3 8 8 C 1.37877 * 120.00122 * 65.21623 * 6 4 3 9 9 N 1.31514 * 119.99931 * 188.18391 * 8 6 4 10 10 Si 1.86801 * 120.00125 * 8.19308 * 8 6 4 11 11 H 1.48500 * 109.47249 * 92.30960 * 10 8 6 12 12 H 1.48501 * 109.47298 * 212.31365 * 10 8 6 13 13 H 1.48497 * 109.46836 * 332.31241 * 10 8 6 14 14 C 1.50697 * 109.47265 * 78.08265 * 4 3 2 15 15 C 1.38223 * 119.61990 * 205.55782 * 14 4 3 16 16 C 1.38628 * 119.15738 * 179.76037 * 15 14 4 17 17 C 1.38675 * 118.42559 * 0.50101 * 16 15 14 18 18 C 1.38182 * 119.15770 * 359.73732 * 17 16 15 19 19 N 1.31856 * 119.61298 * 25.82773 * 14 4 3 20 20 H 1.09001 * 109.46791 * 299.99758 * 1 2 3 21 21 H 1.08998 * 109.47307 * 59.99362 * 1 2 3 22 22 H 1.08998 * 109.47212 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46600 * 240.00760 * 2 1 3 24 24 H 1.08998 * 109.47307 * 120.00638 * 2 1 3 25 25 H 1.00891 * 111.00565 * 298.49377 * 3 2 1 26 26 H 0.97008 * 119.99732 * 179.97438 * 9 8 6 27 27 H 1.08001 * 120.42144 * 359.97410 * 15 14 4 28 28 H 1.08004 * 120.78575 * 180.26341 * 16 15 14 29 29 H 1.07997 * 120.42026 * 179.71571 * 17 16 15 30 30 H 1.08002 * 119.61331 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4823 1.4262 0.1306 5 1 3.8016 0.6941 0.8724 6 6 3.9089 2.8037 0.5683 7 1 4.5024 3.4200 -0.0908 8 6 3.5415 3.2772 1.8100 9 7 3.7729 4.5316 2.1302 10 14 2.7155 2.1369 3.0375 11 1 3.7462 1.5165 3.9081 12 1 1.7645 2.9138 3.8726 13 1 1.9790 1.0739 2.3076 14 6 4.1146 1.1030 -1.1985 15 6 5.3884 0.5676 -1.2369 16 6 5.9589 0.2693 -2.4646 17 6 5.2279 0.5316 -3.6135 18 6 3.9617 1.0727 -3.4969 19 7 3.4485 1.3393 -2.3116 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.7166 1.8757 -0.8278 26 1 3.5140 4.8648 3.0037 27 1 5.9309 0.3808 -0.3219 28 1 6.9508 -0.1537 -2.5251 29 1 5.6430 0.3161 -4.5869 30 1 3.3861 1.2803 -4.3869 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260292470.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:43 Heat of formation + Delta-G solvation = 38.070568 kcal Electronic energy + Delta-G solvation = -13339.139327 eV Core-core repulsion = 11134.411701 eV Total energy + Delta-G solvation = -2204.727626 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.68002 -35.92984 -32.60907 -31.90885 -31.33501 -29.05036 -26.20095 -23.33566 -22.90964 -21.35231 -20.20070 -17.01646 -16.44034 -15.63423 -15.16184 -14.46246 -14.28530 -13.69137 -13.34156 -12.98240 -12.68380 -12.62758 -11.83155 -11.58136 -11.37986 -11.09855 -10.64401 -10.54253 -10.36748 -9.78973 -9.40518 -9.24192 -8.88151 -8.51404 -8.23678 -7.21742 -6.01430 -4.08132 1.68284 1.79220 3.45395 3.55058 3.74890 4.37688 4.63581 4.86694 5.13160 5.21574 5.36600 5.53253 5.60100 5.70809 5.73682 5.93032 6.11768 6.15593 6.28358 6.35730 6.50959 6.59287 6.65475 6.70300 6.79413 7.24404 7.58452 8.24006 8.37481 8.66440 8.70722 9.00127 9.62728 11.08859 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.029138 B = 0.012982 C = 0.010215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.708187 B = 2156.342046 C = 2740.360263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 N -0.669 5.669 4 C 0.232 3.768 5 H 0.050 0.950 6 C -0.509 4.509 7 H 0.068 0.932 8 C 0.093 3.907 9 N -0.894 5.894 10 Si 0.881 3.119 11 H -0.294 1.294 12 H -0.295 1.295 13 H -0.228 1.228 14 C 0.148 3.852 15 C -0.170 4.170 16 C -0.080 4.080 17 C -0.202 4.202 18 C 0.096 3.904 19 N -0.485 5.485 20 H 0.058 0.942 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.012 0.988 24 H 0.057 0.943 25 H 0.345 0.655 26 H 0.264 0.736 27 H 0.132 0.868 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 -10.136 -7.206 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.301 5.301 4 C 0.123 3.877 5 H 0.067 0.933 6 C -0.548 4.548 7 H 0.086 0.914 8 C -0.112 4.112 9 N -0.531 5.531 10 Si 0.708 3.292 11 H -0.221 1.221 12 H -0.221 1.221 13 H -0.150 1.150 14 C 0.009 3.991 15 C -0.190 4.190 16 C -0.106 4.106 17 C -0.222 4.222 18 C -0.061 4.061 19 N -0.195 5.195 20 H 0.077 0.923 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.030 0.970 24 H 0.075 0.925 25 H 0.165 0.835 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.088 -9.557 -6.355 11.529 hybrid contribution 0.916 -0.991 -0.383 1.403 sum -0.172 -10.549 -6.738 12.518 Atomic orbital electron populations 1.21710 0.96306 1.00077 1.01977 1.21868 0.94813 0.92755 0.98610 1.61407 1.12186 1.11114 1.45389 1.18743 0.84271 0.98511 0.86210 0.93264 1.20566 1.34432 0.97998 1.01761 0.91361 1.24866 0.93454 0.94671 0.98175 1.69962 1.47029 1.14368 1.21738 0.86785 0.79517 0.83022 0.79903 1.22132 1.22129 1.15014 1.22789 0.91329 0.88691 0.96323 1.22011 0.97113 1.01425 0.98491 1.21488 0.99247 0.97179 0.92719 1.21908 0.97000 1.04439 0.98893 1.22642 0.93114 0.94850 0.95540 1.67392 1.37597 1.16376 0.98125 0.92310 0.93177 0.93650 0.97011 0.92452 0.83522 0.92675 0.85031 0.85759 0.85896 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 10.22 37.16 0.38 -1.94 16 2 C 0.05 0.94 5.58 -3.83 -0.02 0.92 16 3 N -0.67 -14.88 4.29 -109.19 -0.47 -15.35 16 4 C 0.23 5.44 1.53 -70.02 -0.11 5.33 16 5 H 0.05 1.15 6.69 -51.93 -0.35 0.80 16 6 C -0.51 -14.28 9.25 -34.44 -0.32 -14.60 16 7 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 8 C 0.09 2.68 5.46 -17.82 -0.10 2.58 16 9 N -0.89 -27.47 13.96 55.43 0.77 -26.69 16 10 Si 0.88 21.78 26.84 -169.99 -4.56 17.22 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.23 -5.30 4.70 56.52 0.27 -5.04 16 14 C 0.15 3.14 5.31 -82.59 -0.44 2.70 16 15 C -0.17 -3.15 9.76 -39.44 -0.39 -3.54 16 16 C -0.08 -1.24 10.18 -39.28 -0.40 -1.64 16 17 C -0.20 -2.97 10.11 -39.44 -0.40 -3.37 16 18 C 0.10 1.58 11.18 -17.55 -0.20 1.39 16 19 N -0.49 -9.83 9.02 -9.47 -0.09 -9.91 16 20 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.01 0.22 7.86 -51.93 -0.41 -0.19 16 24 H 0.06 1.09 7.31 -51.93 -0.38 0.71 16 25 H 0.34 7.80 7.72 -39.30 -0.30 7.50 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 28 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 254.14 15.07 3.83 3.83 Total: -1.00 -31.03 254.14 -6.58 -37.61 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.09 Total: 5.46 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.98 Total: -12.17 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.22 Total: -51.95 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.56 Total: 17.22 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.03 -6.58 -37.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260292470.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.684 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds