Wall clock time and date at job start Thu Apr 9 2020 14:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46680 * 2 1 4 4 C 1.50695 * 109.47216 * 120.00263 * 2 1 3 5 5 H 1.08005 * 120.00062 * 120.00383 * 4 2 1 6 6 C 1.37876 * 120.00286 * 299.99971 * 4 2 1 7 7 N 1.31516 * 120.00133 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99805 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47259 * 89.99905 * 8 6 4 10 10 H 1.48497 * 109.46956 * 209.99774 * 8 6 4 11 11 H 1.48494 * 109.47377 * 329.99840 * 8 6 4 12 12 N 1.46503 * 109.46827 * 240.00709 * 2 1 3 13 13 C 1.34940 * 126.03757 * 324.98952 * 12 2 1 14 14 C 1.35317 * 107.74438 * 179.77616 * 13 12 2 15 15 C 1.39872 * 107.92021 * 0.23195 * 14 13 12 16 16 C 1.50701 * 125.89724 * 179.97438 * 15 14 13 17 17 C 1.52996 * 117.49965 * 343.74713 * 16 15 14 18 18 C 1.53002 * 117.49824 * 275.08650 * 16 15 14 19 19 N 1.30838 * 108.20312 * 359.97438 * 15 14 13 20 20 H 1.09005 * 109.46530 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47040 * 299.99651 * 1 2 3 22 22 H 1.08996 * 109.47274 * 59.99986 * 1 2 3 23 23 H 0.97003 * 119.99801 * 179.97438 * 7 6 4 24 24 H 1.08002 * 126.13053 * 0.04913 * 13 12 2 25 25 H 1.08004 * 126.04102 * 180.24995 * 14 13 12 26 26 H 1.09004 * 115.55113 * 129.41527 * 16 15 14 27 27 H 1.08996 * 117.49999 * 359.97438 * 17 16 15 28 28 H 1.09005 * 117.50120 * 145.02000 * 17 16 15 29 29 H 1.09001 * 117.49717 * 214.97762 * 18 16 15 30 30 H 1.08994 * 117.49969 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1374 -0.8598 3.5565 8 14 0.6248 1.2789 2.6542 9 1 -0.8027 0.8724 2.6999 10 1 0.9760 1.9948 3.9069 11 1 0.8470 2.1764 1.4922 12 7 2.0183 -0.6905 -1.1963 13 6 1.4403 -1.7557 -1.7896 14 6 2.1937 -2.0892 -2.8630 15 6 3.2720 -1.2004 -2.9248 16 6 4.3635 -1.2063 -3.9638 17 6 4.5239 -2.4689 -4.8128 18 6 5.5552 -2.1373 -3.7313 19 7 3.1693 -0.3630 -1.9247 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.9033 -0.5282 4.4375 24 1 0.5357 -2.2506 -1.4682 25 1 1.9971 -2.8984 -3.5507 26 1 4.5598 -0.2480 -4.4449 27 1 3.8402 -3.2955 -4.6196 28 1 4.8261 -2.3414 -5.8524 29 1 6.5354 -1.7918 -4.0598 30 1 5.5499 -2.7452 -2.8267 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260334147.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:45 Heat of formation + Delta-G solvation = 82.755207 kcal Electronic energy + Delta-G solvation = -13055.078595 eV Core-core repulsion = 10852.288640 eV Total energy + Delta-G solvation = -2202.789955 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.04464 -38.08877 -36.40203 -33.94224 -31.02491 -30.31704 -27.36384 -24.94723 -23.56417 -23.00488 -21.10491 -20.16749 -18.96862 -18.07782 -16.94554 -16.28825 -15.66069 -15.15379 -14.96726 -14.62684 -14.19830 -14.10455 -13.71067 -13.04676 -12.80920 -12.67566 -12.29202 -12.20111 -11.88896 -11.65379 -11.53482 -11.37224 -11.03135 -10.89130 -10.00083 -9.29294 -8.45746 -6.57002 1.17067 1.24355 1.32631 1.42144 1.81148 1.92974 2.19521 2.86891 3.02070 3.66457 3.97957 4.03776 4.21675 4.22387 4.25410 4.40963 4.50493 4.72183 4.78821 4.83998 4.88606 5.03906 5.19668 5.20545 5.29655 5.33924 5.39410 5.85533 6.00906 6.38887 6.47902 7.02706 7.08838 8.71250 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.055940 B = 0.008133 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.412560 B = 3442.015564 C = 3620.303817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.254 3.746 3 H 0.045 0.955 4 C -0.547 4.547 5 H 0.024 0.976 6 C 0.024 3.976 7 N -0.936 5.936 8 Si 0.952 3.048 9 H -0.244 1.244 10 H -0.290 1.290 11 H -0.249 1.249 12 N -0.349 5.349 13 C 0.052 3.948 14 C -0.288 4.288 15 C 0.077 3.923 16 C -0.098 4.098 17 C -0.137 4.137 18 C -0.172 4.172 19 N -0.347 5.347 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.274 0.726 24 H 0.190 0.810 25 H 0.170 0.830 26 H 0.121 0.879 27 H 0.101 0.899 28 H 0.128 0.872 29 H 0.118 0.882 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 -0.771 -14.484 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.152 3.848 3 H 0.063 0.937 4 C -0.585 4.585 5 H 0.043 0.957 6 C -0.176 4.176 7 N -0.574 5.574 8 Si 0.776 3.224 9 H -0.169 1.169 10 H -0.217 1.217 11 H -0.173 1.173 12 N -0.129 5.129 13 C -0.096 4.096 14 C -0.317 4.317 15 C -0.088 4.088 16 C -0.118 4.118 17 C -0.174 4.174 18 C -0.210 4.210 19 N -0.170 5.170 20 H 0.094 0.906 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.207 0.793 25 H 0.188 0.812 26 H 0.139 0.861 27 H 0.120 0.880 28 H 0.146 0.854 29 H 0.136 0.864 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.594 0.307 -13.546 13.643 hybrid contribution -0.468 -0.251 0.646 0.836 sum -2.062 0.056 -12.900 13.064 Atomic orbital electron populations 1.22374 0.93796 1.03488 1.01742 1.19296 0.92952 0.92832 0.79686 0.93703 1.21231 1.33245 1.13405 0.90590 0.95717 1.25818 0.96987 1.00241 0.94507 1.70017 1.46308 1.42192 0.98924 0.85816 0.79644 0.78815 0.78076 1.16929 1.21712 1.17280 1.48968 1.17819 1.24201 1.21905 1.22973 1.00915 0.91071 0.94666 1.21520 0.98981 1.07324 1.03897 1.21947 0.97222 0.94813 0.94788 1.20221 0.95559 0.97570 0.98466 1.23113 1.00833 0.96404 0.97021 1.23024 0.94702 1.02330 1.00983 1.77154 1.04640 1.26828 1.08373 0.90627 0.91923 0.90934 0.91682 0.79333 0.81212 0.86088 0.88049 0.85359 0.86411 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.06 8.31 71.98 0.60 -5.46 16 2 C 0.25 12.31 2.90 44.24 0.13 12.43 16 3 H 0.05 2.27 7.20 -2.39 -0.02 2.26 16 4 C -0.55 -31.90 9.42 25.60 0.24 -31.66 16 5 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16 6 C 0.02 1.39 5.45 84.65 0.46 1.85 16 7 N -0.94 -57.68 13.96 21.45 0.30 -57.38 16 8 Si 0.95 42.27 24.37 68.60 1.67 43.95 16 9 H -0.24 -9.74 6.87 99.48 0.68 -9.05 16 10 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.25 -10.36 6.53 99.48 0.65 -9.71 16 12 N -0.35 -16.22 3.51 -331.06 -1.16 -17.38 16 13 C 0.05 2.00 10.59 83.54 0.88 2.88 16 14 C -0.29 -10.00 10.11 21.99 0.22 -9.78 16 15 C 0.08 2.95 6.85 43.10 0.30 3.24 16 16 C -0.10 -2.82 6.33 -11.54 -0.07 -2.89 16 17 C -0.14 -2.76 10.02 30.62 0.31 -2.46 16 18 C -0.17 -4.29 10.24 30.62 0.31 -3.98 16 19 N -0.35 -16.32 12.58 -47.38 -0.60 -16.91 16 20 H 0.07 2.73 7.16 -2.38 -0.02 2.72 16 21 H 0.06 2.43 3.27 -2.39 -0.01 2.42 16 22 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 23 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 24 H 0.19 6.03 7.26 -2.91 -0.02 6.01 16 25 H 0.17 4.53 7.39 -2.91 -0.02 4.50 16 26 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 27 H 0.10 2.00 7.15 -2.39 -0.02 1.98 16 28 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -70.97 251.65 4.64 -66.33 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 1.05 Total: 17.21 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 3.38 Total: -35.81 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -1.46 Total: -91.67 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.67 Total: 43.95 kcal Total: -70.97 4.64 -66.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260334147.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.086 kcal (2) G-P(sol) polarization free energy of solvation -70.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds