Wall clock time and date at job start Thu Apr 9 2020 14:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46916 * 2 1 4 4 C 1.50693 * 109.47242 * 239.99539 * 2 1 3 5 5 H 1.07995 * 120.00333 * 239.99759 * 4 2 1 6 6 C 1.37883 * 120.00007 * 60.00149 * 4 2 1 7 7 N 1.31519 * 119.99785 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00171 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47290 * 90.00193 * 8 6 4 10 10 H 1.48498 * 109.47302 * 210.00197 * 8 6 4 11 11 H 1.48504 * 109.47296 * 329.99934 * 8 6 4 12 12 N 1.46500 * 109.46956 * 119.99871 * 2 1 3 13 13 C 1.38999 * 120.00157 * 62.62919 * 12 2 1 14 14 C 1.39135 * 119.70620 * 6.05461 * 13 12 2 15 15 C 1.38298 * 119.09807 * 180.02562 * 14 13 12 16 16 C 1.38886 * 118.50659 * 359.97438 * 15 14 13 17 17 C 1.38024 * 119.32630 * 0.27713 * 16 15 14 18 18 N 1.31970 * 120.85692 * 359.45200 * 17 16 15 19 19 H 1.08992 * 109.47244 * 299.36793 * 1 2 3 20 20 H 1.08999 * 109.47026 * 59.37211 * 1 2 3 21 21 H 1.09003 * 109.46669 * 179.36801 * 1 2 3 22 22 H 1.08996 * 109.46922 * 179.87979 * 3 2 1 23 23 H 1.08998 * 109.46871 * 299.87989 * 3 2 1 24 24 H 1.08997 * 109.47322 * 59.88184 * 3 2 1 25 25 H 0.96998 * 119.99495 * 179.97438 * 7 6 4 26 26 H 0.97005 * 119.99974 * 242.63609 * 12 2 1 27 27 H 1.07998 * 120.44939 * 0.02562 * 14 13 12 28 28 H 1.08000 * 120.74771 * 179.97438 * 15 14 13 29 29 H 1.08000 * 120.33612 * 180.02562 * 16 15 14 30 30 H 1.08006 * 119.56887 * 179.70306 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.3449 -2.1617 -4.4123 10 1 2.4874 -0.1404 -5.1119 11 1 3.6310 -1.7567 -3.7118 12 7 2.0184 -0.6906 1.1962 13 6 1.7282 -2.0362 1.3890 14 6 1.0837 -2.7532 0.3858 15 6 0.8007 -4.0912 0.5911 16 6 1.1735 -4.6701 1.7973 17 6 1.8056 -3.8979 2.7509 18 7 2.0677 -2.6243 2.5256 19 1 -0.3633 0.5039 0.8955 20 1 -0.3633 0.5235 -0.8843 21 1 -0.3633 -1.0277 -0.0113 22 1 3.1300 1.4425 0.0022 23 1 1.6784 1.9557 -0.8911 24 1 1.6750 1.9570 0.8889 25 1 0.7089 1.1611 -3.4845 26 1 2.5441 -0.2087 1.8538 27 1 0.8082 -2.2714 -0.5407 28 1 0.3009 -4.6729 -0.1693 29 1 0.9673 -5.7128 1.9887 30 1 2.0929 -4.3429 3.6922 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260353948.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:46 Heat of formation + Delta-G solvation = 26.443899 kcal Electronic energy + Delta-G solvation = -13601.500714 eV Core-core repulsion = 11396.268917 eV Total energy + Delta-G solvation = -2205.231797 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.94105 -38.21856 -34.60527 -33.10045 -31.98326 -29.51129 -27.68734 -27.28917 -24.06022 -23.36178 -21.27142 -18.72522 -17.90414 -17.23718 -16.76690 -16.16442 -15.27112 -15.03405 -14.91223 -14.49611 -13.69262 -13.42328 -13.38106 -12.95103 -12.88083 -12.59321 -12.46711 -12.30411 -11.89916 -11.81959 -11.27320 -10.64645 -10.42482 -10.36691 -10.15016 -8.31667 -8.00224 -6.19398 0.66575 0.79589 1.41569 1.45461 1.53171 2.40675 2.71120 3.15890 3.27618 4.03292 4.23564 4.53915 4.63225 4.68336 4.78794 4.81550 4.93849 5.05224 5.23633 5.27571 5.42553 5.52445 5.60390 5.72115 5.84079 5.90103 6.10233 6.30372 6.46210 6.83862 7.11703 7.42573 7.60971 8.92195 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.034435 B = 0.012429 C = 0.010193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.939134 B = 2252.293989 C = 2746.242302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.290 3.710 3 C -0.133 4.133 4 C -0.523 4.523 5 H 0.046 0.954 6 C 0.032 3.968 7 N -0.900 5.900 8 Si 0.945 3.055 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.713 5.713 13 C 0.395 3.605 14 C -0.250 4.250 15 C -0.058 4.058 16 C -0.246 4.246 17 C 0.123 3.877 18 N -0.585 5.585 19 H 0.020 0.980 20 H 0.075 0.925 21 H 0.035 0.965 22 H 0.033 0.967 23 H 0.081 0.919 24 H 0.035 0.965 25 H 0.264 0.736 26 H 0.389 0.611 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.156 0.844 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 -6.279 4.754 7.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.206 3.794 3 C -0.191 4.191 4 C -0.561 4.561 5 H 0.064 0.936 6 C -0.169 4.169 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.342 5.342 13 C 0.159 3.841 14 C -0.274 4.274 15 C -0.084 4.084 16 C -0.269 4.269 17 C -0.034 4.034 18 N -0.304 5.304 19 H 0.039 0.961 20 H 0.094 0.906 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.100 0.900 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.223 0.777 27 H 0.163 0.837 28 H 0.161 0.839 29 H 0.174 0.826 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.297 -5.538 5.033 7.489 hybrid contribution 0.125 -0.459 -1.340 1.422 sum -0.172 -5.997 3.693 7.045 Atomic orbital electron populations 1.22151 0.97933 0.99931 1.00106 1.18054 0.90668 0.89547 0.81174 1.21843 0.98992 0.96876 1.01393 1.21452 1.31412 1.12172 0.91095 0.93558 1.25378 0.95178 0.95569 1.00782 1.69874 1.36783 1.23102 1.24053 0.85750 0.78579 0.78573 0.79885 1.20075 1.20793 1.20561 1.45138 1.57587 1.06367 1.25104 1.18601 0.90007 0.86460 0.89075 1.22355 1.06928 0.96269 1.01879 1.21672 0.95432 0.93687 0.97590 1.21984 1.06950 1.02478 0.95493 1.22834 0.93131 0.87848 0.99580 1.67189 1.27278 1.14261 1.21716 0.96128 0.90613 0.94581 0.94824 0.90034 0.94619 0.92622 0.77729 0.83741 0.83853 0.82596 0.80476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.67 8.13 71.98 0.59 -6.08 16 2 C 0.29 13.68 0.79 2.86 0.00 13.68 16 3 C -0.13 -5.97 8.37 71.98 0.60 -5.37 16 4 C -0.52 -26.80 5.57 25.60 0.14 -26.65 16 5 H 0.05 2.50 6.82 -2.91 -0.02 2.48 16 6 C 0.03 1.60 5.15 84.66 0.44 2.04 16 7 N -0.90 -46.47 9.36 21.45 0.20 -46.27 16 8 Si 0.95 41.59 29.54 68.60 2.03 43.62 16 9 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 N -0.71 -31.46 5.25 -308.33 -1.62 -33.08 16 13 C 0.40 17.19 7.16 133.06 0.95 18.14 16 14 C -0.25 -10.61 6.91 22.50 0.16 -10.46 16 15 C -0.06 -2.00 10.17 22.44 0.23 -1.77 16 16 C -0.25 -7.25 10.10 22.37 0.23 -7.02 16 17 C 0.12 3.91 11.17 84.62 0.95 4.85 16 18 N -0.58 -23.21 10.39 -193.26 -2.01 -25.22 16 19 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 20 H 0.08 3.80 6.09 -2.39 -0.01 3.78 16 21 H 0.04 1.67 5.44 -2.39 -0.01 1.66 16 22 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.08 3.99 6.07 -2.39 -0.01 3.98 16 24 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.26 13.12 8.31 -92.71 -0.77 12.35 16 26 H 0.39 15.99 8.60 -92.70 -0.80 15.19 16 27 H 0.15 6.86 4.08 -2.91 -0.01 6.85 16 28 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 29 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 30 H 0.18 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -55.81 243.37 3.23 -52.58 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.35 Total: 27.01 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 4.28 Total: -18.64 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -3.43 Total: -104.57 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -55.81 3.23 -52.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260353948.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.027 kcal (2) G-P(sol) polarization free energy of solvation -55.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds