Wall clock time and date at job start Thu Apr 9 2020 14:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46614 * 2 1 4 4 C 1.52997 * 109.47208 * 119.99946 * 2 1 3 5 5 H 1.09005 * 109.47172 * 297.72328 * 4 2 1 6 6 C 1.50701 * 109.46900 * 57.71731 * 4 2 1 7 7 H 1.08001 * 119.99779 * 27.34647 * 6 4 2 8 8 C 1.37874 * 120.00015 * 207.33835 * 6 4 2 9 9 N 1.31513 * 120.00000 * 5.70635 * 8 6 4 10 10 Si 1.86803 * 120.00007 * 185.70581 * 8 6 4 11 11 H 1.48495 * 109.46957 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47194 * 120.00464 * 10 8 6 13 13 H 1.48502 * 109.46887 * 240.00133 * 10 8 6 14 14 C 1.50694 * 109.47256 * 177.71972 * 4 2 1 15 15 C 1.38392 * 119.99927 * 274.97821 * 14 4 2 16 16 N 1.32132 * 119.99458 * 179.76688 * 15 14 4 17 17 C 1.32156 * 120.00003 * 0.50668 * 16 15 14 18 18 C 1.38351 * 120.00065 * 359.49699 * 17 16 15 19 19 N 1.32126 * 119.99887 * 94.99929 * 14 4 2 20 20 H 1.08996 * 109.47699 * 294.42264 * 1 2 3 21 21 H 1.09004 * 109.47181 * 54.42609 * 1 2 3 22 22 H 1.09008 * 109.47024 * 174.41966 * 1 2 3 23 23 H 1.08996 * 109.47218 * 240.00361 * 2 1 3 24 24 H 1.09003 * 109.46909 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47723 * 299.99928 * 3 2 1 26 26 H 1.09005 * 109.47260 * 60.00250 * 3 2 1 27 27 H 0.97006 * 120.00166 * 179.97438 * 9 8 6 28 28 H 1.07990 * 120.00187 * 0.02562 * 15 14 4 29 29 H 1.07999 * 120.00182 * 179.76321 * 17 16 15 30 30 H 1.08000 * 119.99487 * 180.27302 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7104 -0.1843 2.1388 6 6 1.4920 -2.1248 1.2778 7 1 1.2375 -2.6240 0.3545 8 6 1.3156 -2.7715 2.4826 9 7 1.5184 -2.1269 3.6108 10 14 0.7885 -4.5634 2.5123 11 1 0.6271 -5.0550 1.1205 12 1 1.8225 -5.3720 3.2067 13 1 -0.5036 -4.6874 3.2336 14 6 3.5459 -0.7704 1.2213 15 6 4.1925 -1.7833 0.5349 16 7 5.5129 -1.8237 0.5066 17 6 6.2160 -0.9026 1.1421 18 6 5.5694 0.1100 1.8283 19 7 4.2488 0.1533 1.8525 20 1 -0.3634 0.4249 0.9356 21 1 -0.3634 0.5979 -0.8359 22 1 -0.3633 -1.0229 -0.0999 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6765 1.9564 0.8900 27 1 1.3939 -2.5819 4.4585 28 1 3.6180 -2.5382 0.0190 29 1 7.2952 -0.9377 1.1222 30 1 6.1441 0.8652 2.3439 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260417782.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:49 Heat of formation + Delta-G solvation = 24.667686 kcal Electronic energy + Delta-G solvation = -13518.085032 eV Core-core repulsion = 11312.776213 eV Total energy + Delta-G solvation = -2205.308819 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.15103 -36.08441 -33.18834 -32.47291 -30.73524 -27.39154 -26.27443 -23.96023 -23.50989 -21.80456 -18.98309 -16.97769 -16.13804 -16.06791 -14.95413 -14.66334 -14.00303 -13.62945 -12.98706 -12.86902 -12.15728 -11.83883 -11.47116 -11.37840 -11.02356 -10.82923 -10.65350 -10.47389 -10.31069 -10.22104 -9.97795 -9.37489 -9.15342 -8.67000 -8.10784 -8.06359 -6.16211 -4.22365 1.74386 2.07887 3.23245 3.32725 3.35000 4.32098 4.64773 4.94544 5.07850 5.30198 5.48396 5.68635 5.87018 5.93175 6.01030 6.25195 6.36719 6.41001 6.48089 6.61681 6.69020 6.78798 7.05357 7.10833 7.23102 7.44972 7.68594 7.78273 8.15773 8.23990 8.80530 8.88160 9.43599 10.91951 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.025052 B = 0.014848 C = 0.010952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.395919 B = 1885.354000 C = 2555.909403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.080 4.080 3 C -0.142 4.142 4 C 0.084 3.916 5 H 0.077 0.923 6 C -0.518 4.518 7 H 0.064 0.936 8 C 0.070 3.930 9 N -0.877 5.877 10 Si 0.888 3.112 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.145 3.855 15 C 0.059 3.941 16 N -0.454 5.454 17 C 0.000 4.000 18 C 0.037 3.963 19 N -0.450 5.450 20 H 0.049 0.951 21 H 0.030 0.970 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.052 0.948 27 H 0.263 0.737 28 H 0.168 0.832 29 H 0.150 0.850 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 3.317 -4.647 6.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.099 4.099 3 C -0.199 4.199 4 C 0.064 3.936 5 H 0.095 0.905 6 C -0.556 4.556 7 H 0.082 0.918 8 C -0.134 4.134 9 N -0.513 5.513 10 Si 0.715 3.285 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.005 3.995 15 C -0.102 4.102 16 N -0.169 5.169 17 C -0.158 4.158 18 C -0.122 4.122 19 N -0.165 5.165 20 H 0.068 0.932 21 H 0.049 0.951 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.185 0.815 29 H 0.168 0.832 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.128 3.313 -4.436 6.360 hybrid contribution 0.016 -1.061 0.382 1.128 sum 3.144 2.252 -4.055 5.603 Atomic orbital electron populations 1.21613 0.95308 1.01631 0.99669 1.21073 0.95866 0.94215 0.98723 1.21863 1.00341 0.97475 1.00244 1.18031 0.83020 0.97149 0.95420 0.90496 1.20996 1.43350 0.98454 0.92800 0.91775 1.25042 0.94531 0.98128 0.95740 1.69975 1.47723 1.36177 0.97464 0.86593 0.78289 0.85119 0.78495 1.19298 1.20975 1.20839 1.23565 1.00534 0.87939 0.87504 1.23652 0.89691 0.98709 0.98131 1.68340 1.08439 1.23701 1.16422 1.23342 1.00707 0.93599 0.98185 1.23577 0.92375 0.98370 0.97925 1.68479 1.06300 1.25628 1.16099 0.93213 0.95098 0.91855 0.93010 0.93756 0.94412 0.92875 0.92716 0.81527 0.83227 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.80 37.16 0.33 -2.01 16 2 C -0.08 -1.60 2.49 -90.62 -0.23 -1.82 16 3 C -0.14 -2.60 8.93 37.16 0.33 -2.27 16 4 C 0.08 1.98 1.75 -92.93 -0.16 1.82 16 5 H 0.08 2.09 7.46 -51.93 -0.39 1.70 16 6 C -0.52 -12.99 5.64 -34.44 -0.19 -13.19 16 7 H 0.06 1.56 7.73 -52.49 -0.41 1.16 16 8 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 9 N -0.88 -24.72 12.88 55.43 0.71 -24.01 16 10 Si 0.89 20.47 29.54 -169.99 -5.02 15.44 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 14 C 0.15 3.34 4.87 -82.41 -0.40 2.94 16 15 C 0.06 1.31 10.33 -17.37 -0.18 1.13 16 16 N -0.45 -9.39 10.50 -13.06 -0.14 -9.53 16 17 C 0.00 0.00 11.22 -17.37 -0.19 -0.20 16 18 C 0.04 0.68 11.22 -17.37 -0.19 0.48 16 19 N -0.45 -9.97 9.74 -9.29 -0.09 -10.06 16 20 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 1.22 7.30 -51.92 -0.38 0.84 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.04 0.84 6.81 -51.93 -0.35 0.49 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.17 3.57 7.20 -52.49 -0.38 3.20 16 29 H 0.15 2.07 8.06 -52.49 -0.42 1.64 16 30 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 256.31 15.07 3.86 3.86 Total: -1.00 -28.48 256.31 -5.66 -34.14 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.00 Total: 1.50 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -0.99 Total: -11.35 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.49 Total: -43.59 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.48 -5.66 -34.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260417782.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.805 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds