Wall clock time and date at job start Thu Apr 9 2020 14:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46815 * 2 1 4 4 C 1.53003 * 109.46850 * 119.99442 * 2 1 3 5 5 H 1.08995 * 109.47254 * 304.87942 * 4 2 1 6 6 C 1.50701 * 109.46864 * 184.87761 * 4 2 1 7 7 H 1.08005 * 119.99936 * 325.11172 * 6 4 2 8 8 C 1.37876 * 120.00017 * 145.11085 * 6 4 2 9 9 N 1.31512 * 120.00040 * 185.00023 * 8 6 4 10 10 Si 1.86796 * 119.99898 * 5.00394 * 8 6 4 11 11 H 1.48494 * 109.47607 * 84.70940 * 10 8 6 12 12 H 1.48503 * 109.47223 * 204.71115 * 10 8 6 13 13 H 1.48507 * 109.47208 * 324.70975 * 10 8 6 14 14 C 1.50698 * 109.47147 * 64.88103 * 4 2 1 15 15 C 1.38394 * 120.00429 * 84.99518 * 14 4 2 16 16 N 1.32117 * 119.99876 * 180.02562 * 15 14 4 17 17 C 1.32151 * 120.00193 * 359.97438 * 16 15 14 18 18 C 1.38343 * 120.00390 * 0.25880 * 17 16 15 19 19 N 1.32120 * 120.00043 * 265.02152 * 14 4 2 20 20 H 1.08995 * 109.47517 * 299.99921 * 1 2 3 21 21 H 1.08995 * 109.46786 * 60.00596 * 1 2 3 22 22 H 1.08999 * 109.46620 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47517 * 240.00079 * 2 1 3 24 24 H 1.09001 * 109.47430 * 185.06623 * 3 2 1 25 25 H 1.08999 * 109.47193 * 305.07030 * 3 2 1 26 26 H 1.09003 * 109.47211 * 65.07157 * 3 2 1 27 27 H 0.97004 * 119.99811 * 180.02562 * 9 8 6 28 28 H 1.08006 * 119.99665 * 0.02562 * 15 14 4 29 29 H 1.08005 * 120.00025 * 179.97438 * 17 16 15 30 30 H 1.07994 * 120.00237 * 179.71850 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6070 -0.2602 2.1371 6 6 3.5421 -0.6174 1.3112 7 1 4.1224 -0.6321 0.4004 8 6 4.1757 -0.5037 2.5305 9 7 5.4761 -0.3144 2.5808 10 14 3.1868 -0.6186 4.1111 11 1 3.0167 -2.0454 4.4861 12 1 3.9044 0.0963 5.1971 13 1 1.8531 0.0019 3.9069 14 6 1.6388 -2.1725 1.1905 15 6 2.4269 -3.0812 0.5061 16 7 2.0748 -4.3536 0.4542 17 6 0.9703 -4.7586 1.0562 18 6 0.1798 -3.8495 1.7363 19 7 0.5343 -2.5775 1.7919 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 3.1262 1.4440 -0.0907 25 1 1.6043 1.9819 -0.8411 26 1 1.7527 1.9295 0.9319 27 1 5.9219 -0.2348 3.4386 28 1 3.3298 -2.7502 0.0145 29 1 0.6822 -5.7987 1.0134 30 1 -0.7251 -4.1797 2.2244 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260417787.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:50 Heat of formation + Delta-G solvation = 27.687339 kcal Electronic energy + Delta-G solvation = -13571.683722 eV Core-core repulsion = 11366.505845 eV Total energy + Delta-G solvation = -2205.177877 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.38097 -36.27148 -33.40296 -32.45682 -31.02294 -27.87160 -26.36908 -23.89382 -23.67844 -21.81888 -19.04342 -17.36338 -16.37405 -16.23219 -15.23083 -14.59076 -14.14512 -13.62907 -13.20154 -12.82949 -12.36561 -12.18074 -11.95319 -11.51170 -11.04210 -10.91241 -10.73261 -10.52750 -10.34049 -10.23882 -9.81507 -9.63990 -9.21352 -8.71423 -8.34042 -8.28989 -6.22740 -4.24705 1.53135 1.85486 3.23706 3.31206 3.37135 4.31263 4.43230 4.73816 4.93494 5.15758 5.28252 5.52327 5.73276 5.81655 5.88461 6.04137 6.23360 6.27437 6.33663 6.52310 6.58086 6.67561 6.80845 6.95053 7.16305 7.24725 7.29895 7.57473 8.00164 8.31838 8.57984 8.80590 9.39236 10.88427 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.016201 C = 0.012554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.716320 B = 1727.918855 C = 2229.860694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.052 3.948 5 H 0.064 0.936 6 C -0.511 4.511 7 H 0.083 0.917 8 C 0.082 3.918 9 N -0.887 5.887 10 Si 0.864 3.136 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.256 1.256 14 C 0.118 3.882 15 C 0.073 3.927 16 N -0.451 5.451 17 C 0.010 3.990 18 C 0.034 3.966 19 N -0.457 5.457 20 H 0.050 0.950 21 H 0.040 0.960 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.045 0.955 27 H 0.267 0.733 28 H 0.175 0.825 29 H 0.154 0.846 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.831 -2.707 -2.600 9.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 C -0.185 4.185 4 C 0.032 3.968 5 H 0.082 0.918 6 C -0.548 4.548 7 H 0.101 0.899 8 C -0.122 4.122 9 N -0.523 5.523 10 Si 0.692 3.308 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.181 1.181 14 C -0.023 4.023 15 C -0.088 4.088 16 N -0.166 5.166 17 C -0.149 4.149 18 C -0.125 4.125 19 N -0.172 5.172 20 H 0.069 0.931 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.192 0.808 29 H 0.171 0.829 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.672 -2.708 -2.461 9.412 hybrid contribution -0.452 -0.373 1.125 1.268 sum -9.123 -3.081 -1.336 9.722 Atomic orbital electron populations 1.21888 0.97061 1.00811 1.00405 1.20979 0.93315 0.96764 0.98143 1.21642 1.02460 0.94843 0.99530 1.18545 0.97250 0.84566 0.96422 0.91827 1.20821 0.88203 1.51072 0.94750 0.89917 1.25009 0.94689 0.93700 0.98789 1.69876 1.08546 1.47868 1.26038 0.87030 0.81188 0.78902 0.83711 1.20444 1.21210 1.18072 1.23662 0.87973 1.01208 0.89458 1.23750 1.00133 0.88030 0.96900 1.68410 1.14385 1.17569 1.16199 1.23441 0.92948 1.00958 0.97538 1.23588 1.00294 0.90518 0.98063 1.68449 1.15728 1.16064 1.16995 0.93050 0.94042 0.93593 0.92432 0.91048 0.94854 0.93537 0.92348 0.80823 0.82857 0.82868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.98 37.16 0.33 -2.16 16 2 C -0.07 -1.41 2.49 -90.62 -0.23 -1.63 16 3 C -0.13 -2.35 8.76 37.16 0.33 -2.03 16 4 C 0.05 1.18 1.31 -92.92 -0.12 1.06 16 5 H 0.06 1.53 5.15 -51.93 -0.27 1.26 16 6 C -0.51 -13.01 6.06 -34.44 -0.21 -13.22 16 7 H 0.08 2.23 7.97 -52.48 -0.42 1.81 16 8 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 9 N -0.89 -25.63 13.96 55.43 0.77 -24.85 16 10 Si 0.86 21.40 27.39 -169.99 -4.66 16.75 16 11 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.26 -6.15 6.06 56.52 0.34 -5.81 16 14 C 0.12 2.55 4.74 -82.41 -0.39 2.16 16 15 C 0.07 1.54 10.33 -17.37 -0.18 1.36 16 16 N -0.45 -8.89 10.50 -13.06 -0.14 -9.03 16 17 C 0.01 0.16 11.22 -17.38 -0.20 -0.04 16 18 C 0.03 0.58 11.23 -17.37 -0.19 0.39 16 19 N -0.46 -9.37 9.77 -9.29 -0.09 -9.46 16 20 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.04 0.82 6.89 -51.93 -0.36 0.46 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.07 1.43 7.28 -51.93 -0.38 1.05 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.17 3.69 7.14 -52.48 -0.37 3.31 16 29 H 0.15 1.93 8.06 -52.48 -0.42 1.50 16 30 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 252.04 15.07 3.80 3.80 Total: -1.00 -28.85 252.04 -5.22 -34.06 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -3.95 Total: 0.70 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.95 Total: -11.97 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.55 Total: -43.34 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.66 Total: 16.75 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.85 -5.22 -34.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260417787.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.752 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds