Wall clock time and date at job start Thu Apr 9 2020 14:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46815 * 2 1 4 4 C 1.53003 * 109.46850 * 119.99442 * 2 1 3 5 5 H 1.08995 * 109.47254 * 304.87942 * 4 2 1 6 6 C 1.50701 * 109.46864 * 184.87761 * 4 2 1 7 7 H 1.08005 * 119.99936 * 325.11172 * 6 4 2 8 8 C 1.37876 * 120.00017 * 145.11085 * 6 4 2 9 9 N 1.31512 * 120.00040 * 185.00023 * 8 6 4 10 10 Si 1.86796 * 119.99898 * 5.00394 * 8 6 4 11 11 H 1.48494 * 109.47607 * 84.70940 * 10 8 6 12 12 H 1.48503 * 109.47223 * 204.71115 * 10 8 6 13 13 H 1.48507 * 109.47208 * 324.70975 * 10 8 6 14 14 C 1.50698 * 109.47147 * 64.88103 * 4 2 1 15 15 C 1.38394 * 120.00429 * 84.99518 * 14 4 2 16 16 N 1.32117 * 119.99876 * 180.02562 * 15 14 4 17 17 C 1.32151 * 120.00193 * 359.97438 * 16 15 14 18 18 C 1.38343 * 120.00390 * 0.25880 * 17 16 15 19 19 N 1.32120 * 120.00043 * 265.02152 * 14 4 2 20 20 H 1.08995 * 109.47517 * 299.99921 * 1 2 3 21 21 H 1.08995 * 109.46786 * 60.00596 * 1 2 3 22 22 H 1.08999 * 109.46620 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47517 * 240.00079 * 2 1 3 24 24 H 1.09001 * 109.47430 * 185.06623 * 3 2 1 25 25 H 1.08999 * 109.47193 * 305.07030 * 3 2 1 26 26 H 1.09003 * 109.47211 * 65.07157 * 3 2 1 27 27 H 0.97004 * 119.99811 * 180.02562 * 9 8 6 28 28 H 1.08006 * 119.99665 * 0.02562 * 15 14 4 29 29 H 1.08005 * 120.00025 * 179.97438 * 17 16 15 30 30 H 1.07994 * 120.00237 * 179.71850 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6070 -0.2602 2.1371 6 6 3.5421 -0.6174 1.3112 7 1 4.1224 -0.6321 0.4004 8 6 4.1757 -0.5037 2.5305 9 7 5.4761 -0.3144 2.5808 10 14 3.1868 -0.6186 4.1111 11 1 3.0167 -2.0454 4.4861 12 1 3.9044 0.0963 5.1971 13 1 1.8531 0.0019 3.9069 14 6 1.6388 -2.1725 1.1905 15 6 2.4269 -3.0812 0.5061 16 7 2.0748 -4.3536 0.4542 17 6 0.9703 -4.7586 1.0562 18 6 0.1798 -3.8495 1.7363 19 7 0.5343 -2.5775 1.7919 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 3.1262 1.4440 -0.0907 25 1 1.6043 1.9819 -0.8411 26 1 1.7527 1.9295 0.9319 27 1 5.9219 -0.2348 3.4386 28 1 3.3298 -2.7502 0.0145 29 1 0.6822 -5.7987 1.0134 30 1 -0.7251 -4.1797 2.2244 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260417787.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:50 Heat of formation + Delta-G solvation = 8.904172 kcal Electronic energy + Delta-G solvation = -13572.498221 eV Core-core repulsion = 11366.505845 eV Total energy + Delta-G solvation = -2205.992376 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.88772 -37.90222 -34.93219 -34.41758 -32.57229 -29.59905 -27.83752 -25.57838 -25.27440 -23.41775 -20.66621 -19.25456 -17.97213 -17.73287 -16.80942 -16.35035 -15.76285 -15.12524 -14.93835 -14.51498 -14.03760 -13.82699 -13.56215 -13.03196 -12.88603 -12.46197 -12.35062 -12.07553 -11.99978 -11.88930 -11.65544 -11.27599 -11.08321 -10.76617 -9.86435 -9.80503 -8.32915 -6.34678 0.07030 0.34959 1.24815 1.29870 1.38015 2.27701 2.91915 2.98683 3.43087 3.58038 3.83307 4.16565 4.22080 4.33901 4.43392 4.53373 4.73109 4.84287 4.93598 5.02272 5.07757 5.14425 5.23874 5.39287 5.51847 5.64397 5.72566 5.76017 6.27261 6.52238 6.72308 7.06432 7.30417 8.82093 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.016201 C = 0.012554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.716320 B = 1727.918855 C = 2229.860694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 C -0.123 4.123 4 C 0.056 3.944 5 H 0.050 0.950 6 C -0.490 4.490 7 H 0.055 0.945 8 C 0.032 3.968 9 N -0.934 5.934 10 Si 0.912 3.088 11 H -0.288 1.288 12 H -0.283 1.283 13 H -0.243 1.243 14 C 0.098 3.902 15 C 0.050 3.950 16 N -0.465 5.465 17 C 0.023 3.977 18 C 0.043 3.957 19 N -0.473 5.473 20 H 0.050 0.950 21 H 0.067 0.933 22 H 0.039 0.961 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.266 0.734 28 H 0.156 0.844 29 H 0.203 0.797 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.662 -3.834 -2.461 12.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 C -0.181 4.181 4 C 0.035 3.965 5 H 0.068 0.932 6 C -0.529 4.529 7 H 0.073 0.927 8 C -0.167 4.167 9 N -0.573 5.573 10 Si 0.739 3.261 11 H -0.214 1.214 12 H -0.209 1.209 13 H -0.167 1.167 14 C -0.041 4.041 15 C -0.109 4.109 16 N -0.180 5.180 17 C -0.137 4.137 18 C -0.117 4.117 19 N -0.189 5.189 20 H 0.070 0.930 21 H 0.086 0.914 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.173 0.827 29 H 0.220 0.780 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.492 -3.793 -2.343 12.327 hybrid contribution 0.312 -0.183 0.998 1.062 sum -11.180 -3.977 -1.344 11.942 Atomic orbital electron populations 1.21768 0.94798 1.00826 1.01686 1.20977 0.95193 0.96668 0.96482 1.21589 1.00895 0.94842 1.00752 1.18418 0.94747 0.86027 0.97283 0.93226 1.20958 0.90079 1.48536 0.93307 0.92701 1.25603 0.95265 0.94378 1.01425 1.69987 1.10024 1.50865 1.26465 0.86255 0.80691 0.78195 0.80971 1.21415 1.20919 1.16706 1.23177 0.89350 1.00303 0.91246 1.23472 1.00162 0.89033 0.98242 1.68414 1.15964 1.16616 1.17012 1.24287 0.91150 1.03185 0.95107 1.24408 1.01398 0.89054 0.96871 1.68405 1.15269 1.18229 1.17008 0.93047 0.91425 0.94165 0.92729 0.93670 0.91666 0.93838 0.92513 0.82656 0.77985 0.78023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 8.98 71.98 0.65 -3.66 16 2 C -0.07 -2.82 2.49 -10.79 -0.03 -2.84 16 3 C -0.12 -4.49 8.76 71.98 0.63 -3.86 16 4 C 0.06 2.49 1.31 -12.29 -0.02 2.48 16 5 H 0.05 2.36 5.15 -2.39 -0.01 2.35 16 6 C -0.49 -25.82 6.06 25.60 0.16 -25.67 16 7 H 0.05 3.13 7.97 -2.91 -0.02 3.11 16 8 C 0.03 1.81 5.47 84.65 0.46 2.28 16 9 N -0.93 -55.99 13.96 21.45 0.30 -55.69 16 10 Si 0.91 44.58 27.39 68.60 1.88 46.46 16 11 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 12 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 13 H -0.24 -11.25 6.06 99.48 0.60 -10.64 16 14 C 0.10 4.17 4.74 42.55 0.20 4.38 16 15 C 0.05 2.10 10.33 84.69 0.87 2.98 16 16 N -0.47 -17.51 10.50 -195.22 -2.05 -19.56 16 17 C 0.02 0.66 11.22 84.67 0.95 1.61 16 18 C 0.04 1.27 11.23 84.67 0.95 2.22 16 19 N -0.47 -18.18 9.77 -183.30 -1.79 -19.97 16 20 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 21 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.04 1.33 6.89 -2.39 -0.02 1.31 16 23 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.04 1.85 7.28 -2.39 -0.02 1.83 16 25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.16 6.95 7.14 -2.91 -0.02 6.93 16 29 H 0.20 3.84 8.06 -2.91 -0.02 3.82 16 30 H 0.20 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -63.64 252.04 4.18 -59.46 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.01 Total: 9.39 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 4.83 Total: -20.09 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -3.54 Total: -95.22 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Total: -63.64 4.18 -59.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260417787.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.364 kcal (2) G-P(sol) polarization free energy of solvation -63.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds