Wall clock time and date at job start Thu Apr 9 2020 14:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46991 * 2 1 4 4 C 1.53006 * 109.46672 * 119.99805 * 2 1 3 5 5 H 1.08996 * 109.47175 * 301.64498 * 4 2 1 6 6 C 1.50706 * 109.46515 * 181.64655 * 4 2 1 7 7 H 1.08001 * 120.00315 * 325.99128 * 6 4 2 8 8 C 1.37873 * 119.99833 * 146.27362 * 6 4 2 9 9 N 1.31516 * 120.00091 * 354.04073 * 8 6 4 10 10 Si 1.86798 * 120.00080 * 174.04011 * 8 6 4 11 11 H 1.48503 * 109.46905 * 59.99683 * 10 8 6 12 12 H 1.48505 * 109.47273 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47223 * 299.99906 * 10 8 6 14 14 C 1.50698 * 109.47218 * 61.64994 * 4 2 1 15 15 C 1.38621 * 120.44982 * 84.71690 * 14 4 2 16 16 C 1.38574 * 118.39739 * 179.80453 * 15 14 4 17 17 N 1.32353 * 119.10429 * 0.46976 * 16 15 14 18 18 C 1.31780 * 120.81965 * 359.74967 * 17 16 15 19 19 N 1.31811 * 121.75544 * 0.02562 * 18 17 16 20 20 H 1.08993 * 109.47232 * 300.00001 * 1 2 3 21 21 H 1.08997 * 109.46954 * 60.00203 * 1 2 3 22 22 H 1.09001 * 109.46743 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46919 * 239.99593 * 2 1 3 24 24 H 1.08993 * 109.47009 * 185.64096 * 3 2 1 25 25 H 1.09000 * 109.47217 * 305.64379 * 3 2 1 26 26 H 1.09008 * 109.47185 * 65.64100 * 3 2 1 27 27 H 0.97002 * 120.00311 * 180.02562 * 9 8 6 28 28 H 1.08001 * 120.80041 * 0.02562 * 15 14 4 29 29 H 1.07998 * 120.45005 * 180.22117 * 16 15 14 30 30 H 1.07999 * 119.12316 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6527 -0.2247 2.1390 6 6 3.5465 -0.6860 1.2699 7 1 4.1004 -0.7296 0.3438 8 6 4.2177 -0.6038 2.4714 9 7 3.5461 -0.4382 3.5899 10 14 6.0812 -0.7277 2.5105 11 1 6.6672 0.3674 1.6964 12 1 6.5558 -0.6099 3.9127 13 1 6.5020 -2.0383 1.9534 14 6 1.5713 -2.1534 1.2291 15 6 2.2891 -3.1178 0.5391 16 6 1.8218 -4.4223 0.5522 17 7 0.7079 -4.7005 1.2107 18 6 0.0490 -3.7564 1.8520 19 7 0.4659 -2.5061 1.8651 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 3.1252 1.4441 -0.1010 25 1 1.5965 1.9847 -0.8351 26 1 1.7615 1.9264 0.9362 27 1 4.0184 -0.3801 4.4352 28 1 3.1929 -2.8594 0.0072 29 1 2.3570 -5.2007 0.0287 30 1 -0.8567 -4.0141 2.3808 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260437078.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:52 Heat of formation + Delta-G solvation = 24.421334 kcal Electronic energy + Delta-G solvation = -13493.053373 eV Core-core repulsion = 11287.733872 eV Total energy + Delta-G solvation = -2205.319502 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.09895 -36.15628 -32.56641 -32.47982 -31.12402 -27.53958 -26.33150 -24.03907 -23.35444 -21.82142 -19.02392 -16.99342 -16.12928 -15.94825 -14.70163 -14.40182 -14.04347 -13.66792 -12.98025 -12.90281 -12.77649 -11.89289 -11.46442 -11.33063 -11.01867 -10.87393 -10.49481 -10.26282 -10.14234 -9.96304 -9.93318 -9.24480 -9.12407 -8.66737 -8.44262 -8.25534 -6.17495 -4.23331 1.83174 2.03665 3.22940 3.29384 3.30330 4.29913 4.69287 4.86270 4.97839 5.26243 5.53557 5.86844 5.92236 5.94588 6.02086 6.29769 6.36849 6.38783 6.60437 6.64060 6.72336 6.86645 7.06075 7.12409 7.24222 7.46886 7.64731 7.73004 7.95160 8.21816 8.86363 9.01929 9.41754 10.90795 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.025440 B = 0.014388 C = 0.010792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.362378 B = 1945.621873 C = 2593.831202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 C -0.124 4.124 4 C 0.076 3.924 5 H 0.084 0.916 6 C -0.516 4.516 7 H 0.061 0.939 8 C 0.070 3.930 9 N -0.879 5.879 10 Si 0.889 3.111 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.226 3.774 15 C -0.208 4.208 16 C 0.118 3.882 17 N -0.551 5.551 18 C 0.271 3.729 19 N -0.526 5.526 20 H 0.053 0.947 21 H 0.037 0.963 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.030 0.970 26 H 0.049 0.951 27 H 0.265 0.735 28 H 0.144 0.856 29 H 0.152 0.848 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -1.787 -5.513 6.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.181 4.181 4 C 0.057 3.943 5 H 0.102 0.898 6 C -0.554 4.554 7 H 0.079 0.921 8 C -0.134 4.134 9 N -0.514 5.514 10 Si 0.717 3.283 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.081 3.919 15 C -0.230 4.230 16 C -0.046 4.046 17 N -0.267 5.267 18 C -0.017 4.017 19 N -0.240 5.240 20 H 0.072 0.928 21 H 0.056 0.944 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.161 0.839 29 H 0.169 0.831 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.336 -2.008 -4.813 6.191 hybrid contribution 1.860 -0.112 -0.168 1.871 sum -1.476 -2.120 -4.981 5.611 Atomic orbital electron populations 1.21872 0.97112 1.00716 1.00278 1.21066 0.93394 0.96649 0.98609 1.21596 1.01608 0.95265 0.99666 1.18154 0.95627 0.84667 0.95873 0.89831 1.20867 0.89833 1.52013 0.92657 0.92127 1.25033 0.98480 0.94094 0.95791 1.69935 1.35877 1.47410 0.98224 0.86692 0.85525 0.78887 0.77229 1.19898 1.21231 1.20059 1.23124 0.85246 0.99905 0.83646 1.22799 1.02842 0.94374 1.02976 1.22985 0.91848 0.95616 0.94125 1.68233 1.09140 1.38078 1.11208 1.24708 0.98132 0.85177 0.93709 1.68431 1.15921 1.19615 1.20060 0.92811 0.94438 0.93734 0.93129 0.91897 0.95135 0.93180 0.92529 0.83867 0.83106 0.80432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.92 37.16 0.33 -2.29 16 2 C -0.08 -1.57 2.49 -90.62 -0.23 -1.79 16 3 C -0.12 -2.35 8.81 37.16 0.33 -2.02 16 4 C 0.08 1.80 1.87 -92.92 -0.17 1.63 16 5 H 0.08 2.28 7.27 -51.93 -0.38 1.90 16 6 C -0.52 -12.91 5.73 -34.44 -0.20 -13.10 16 7 H 0.06 1.47 7.79 -52.49 -0.41 1.06 16 8 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 9 N -0.88 -24.68 12.78 55.43 0.71 -23.97 16 10 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 C 0.23 5.15 4.87 -82.24 -0.40 4.75 16 15 C -0.21 -4.28 9.26 -39.32 -0.36 -4.64 16 16 C 0.12 2.17 11.30 -17.20 -0.19 1.98 16 17 N -0.55 -10.67 10.44 -14.58 -0.15 -10.83 16 18 C 0.27 5.31 12.29 -92.15 -1.13 4.18 16 19 N -0.53 -11.69 9.71 -10.80 -0.10 -11.79 16 20 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.04 0.85 6.80 -51.93 -0.35 0.50 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 1.24 7.38 -51.93 -0.38 0.86 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.14 2.81 7.29 -52.49 -0.38 2.43 16 29 H 0.15 2.21 8.06 -52.49 -0.42 1.78 16 30 H 0.18 2.81 8.06 -52.49 -0.42 2.39 16 LS Contribution 256.44 15.07 3.86 3.86 Total: -1.00 -28.23 256.44 -6.83 -35.06 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.00 Total: 1.96 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -2.13 Total: -9.56 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.45 Total: -46.59 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.23 -6.83 -35.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260437078.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.479 kcal (2) G-P(sol) polarization free energy of solvation -28.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds