Wall clock time and date at job start Thu Apr 9 2020 14:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47224 * 2 1 4 4 C 1.53003 * 109.46844 * 120.00067 * 2 1 3 5 5 C 1.50696 * 109.46742 * 175.00144 * 4 2 1 6 6 C 1.38329 * 120.37405 * 125.00057 * 5 4 2 7 7 C 1.40904 * 118.15612 * 180.02562 * 6 5 4 8 8 C 1.41543 * 120.66025 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00064 * 6.92384 * 8 7 6 10 10 C 1.40112 * 120.00202 * 186.93078 * 8 7 6 11 11 N 1.30672 * 120.00159 * 182.48678 * 10 8 7 12 12 Si 1.86800 * 119.99793 * 2.48573 * 10 8 7 13 13 H 1.48498 * 109.47270 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47108 * 300.00003 * 12 10 8 15 15 H 1.48495 * 109.47236 * 59.99947 * 12 10 8 16 16 N 1.34064 * 118.67639 * 0.27873 * 7 6 5 17 17 C 1.31381 * 120.58002 * 359.43854 * 16 7 6 18 18 N 1.32050 * 122.04302 * 0.57521 * 17 16 7 19 19 H 1.08999 * 109.47269 * 300.00486 * 1 2 3 20 20 H 1.09007 * 109.46456 * 60.00062 * 1 2 3 21 21 H 1.08998 * 109.47225 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47317 * 240.00065 * 2 1 3 23 23 H 1.08998 * 109.46819 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.46854 * 300.00133 * 3 2 1 25 25 H 1.09008 * 109.46854 * 59.99830 * 3 2 1 26 26 H 1.08991 * 109.47176 * 54.99732 * 4 2 1 27 27 H 1.09007 * 109.46618 * 295.00068 * 4 2 1 28 28 H 1.07999 * 120.92108 * 0.04296 * 6 5 4 29 29 H 0.96995 * 119.99974 * 354.82632 * 11 10 8 30 30 H 1.07991 * 118.97817 * 180.26966 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.8294 1.1889 6 6 4.3201 -0.3469 2.2258 7 6 5.7197 -0.4717 2.1205 8 6 6.5662 0.0033 3.1506 9 1 6.1412 0.3642 4.0755 10 6 7.9557 0.0053 2.9704 11 7 8.7396 0.3982 3.9392 12 14 8.6875 -0.5535 1.3451 13 1 10.1680 -0.4580 1.4099 14 1 8.2938 -1.9612 1.0829 15 1 8.1825 0.3137 0.2506 16 7 6.2336 -1.0447 1.0228 17 6 5.4461 -1.4905 0.0704 18 7 4.1316 -1.3869 0.1424 19 1 -0.3634 0.5139 0.8899 20 1 -0.3632 0.5139 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 3.1301 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6054 -1.7197 1.2952 27 1 1.7516 -0.1583 2.1370 28 1 3.8675 0.1125 3.0921 29 1 8.3589 0.7588 4.7552 30 1 5.8876 -1.9516 -0.8006 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260671436.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:11 Heat of formation + Delta-G solvation = -3.373791 kcal Electronic energy + Delta-G solvation = -13125.900303 eV Core-core repulsion = 10919.375514 eV Total energy + Delta-G solvation = -2206.524789 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.44039 -36.19182 -34.12853 -32.04291 -31.01444 -27.27019 -26.91434 -25.77273 -22.58548 -21.22765 -19.53755 -18.47155 -15.89193 -15.67197 -14.71006 -14.27540 -14.02458 -13.76955 -13.25729 -12.97916 -12.63551 -12.17843 -12.04395 -11.93022 -11.45629 -11.10322 -10.69488 -10.60975 -10.33752 -10.27973 -9.82290 -9.45732 -9.03497 -8.97123 -8.26434 -7.69072 -7.24165 -5.05300 2.36602 2.57644 3.56881 3.65896 3.97126 4.37777 4.60363 5.05661 5.11852 5.20618 5.40061 5.48056 5.64236 5.75993 5.83566 5.96775 5.99803 6.07568 6.24752 6.28943 6.34857 6.50631 6.59445 6.69644 6.83335 6.95199 7.30750 7.48609 7.86356 8.12479 8.45695 8.64862 9.62389 9.87328 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.054808 B = 0.008971 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.747919 B = 3120.311118 C = 3346.406223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.143 4.143 4 C -0.057 4.057 5 C 0.173 3.827 6 C -0.308 4.308 7 C 0.261 3.739 8 C -0.461 4.461 9 H 0.084 0.916 10 C 0.044 3.956 11 N -0.794 5.794 12 Si 1.154 2.846 13 H -0.330 1.330 14 H -0.277 1.277 15 H -0.292 1.292 16 N -0.609 5.609 17 C 0.320 3.680 18 N -0.616 5.616 19 H 0.050 0.950 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.081 0.919 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.285 0.715 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.533 0.054 -4.765 10.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.200 4.200 4 C -0.095 4.095 5 C 0.037 3.963 6 C -0.335 4.335 7 C 0.135 3.865 8 C -0.496 4.496 9 H 0.102 0.898 10 C -0.179 4.179 11 N -0.416 5.416 12 Si 0.988 3.012 13 H -0.263 1.263 14 H -0.204 1.204 15 H -0.220 1.220 16 N -0.336 5.336 17 C 0.029 3.971 18 N -0.340 5.340 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.100 0.900 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.096 0.904 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.789 -0.557 -6.116 9.918 hybrid contribution -1.882 0.784 1.881 2.774 sum -9.671 0.227 -4.234 10.560 Atomic orbital electron populations 1.21853 0.95820 1.01317 1.01243 1.21005 0.94430 0.96247 0.98901 1.21797 1.01624 0.95890 1.00678 1.20482 0.90532 1.00497 0.98013 1.20857 0.95014 0.90792 0.89615 1.22139 0.95253 1.13854 1.02206 1.18822 0.90663 0.87149 0.89823 1.20853 0.93352 1.34792 1.00561 0.89817 1.27911 0.94000 0.90909 1.05040 1.70625 1.40109 1.25521 1.05317 0.81851 0.69885 0.78893 0.70543 1.26305 1.20438 1.21998 1.67302 1.38855 1.21884 1.05519 1.24044 0.86373 0.91592 0.95070 1.68000 1.12140 1.26364 1.27516 0.93041 0.93026 0.92898 0.90046 0.92561 0.93380 0.93190 0.91051 0.91392 0.87304 0.90405 0.81804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.19 37.16 0.34 -1.36 16 2 C -0.09 -1.30 2.85 -90.61 -0.26 -1.55 16 3 C -0.14 -2.16 9.01 37.16 0.33 -1.82 16 4 C -0.06 -0.95 5.12 -27.88 -0.14 -1.10 16 5 C 0.17 3.70 5.18 -82.30 -0.43 3.27 16 6 C -0.31 -7.26 9.57 -38.54 -0.37 -7.63 16 7 C 0.26 6.85 6.41 -84.62 -0.54 6.31 16 8 C -0.46 -12.49 9.63 -37.62 -0.36 -12.85 16 9 H 0.08 2.25 8.05 -52.49 -0.42 1.82 16 10 C 0.04 1.19 5.52 -17.34 -0.10 1.09 16 11 N -0.79 -21.30 13.64 55.55 0.76 -20.55 16 12 Si 1.15 28.14 25.58 -169.99 -4.35 23.79 16 13 H -0.33 -7.90 7.11 56.52 0.40 -7.50 16 14 H -0.28 -6.72 6.69 56.52 0.38 -6.34 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 N -0.61 -15.56 4.78 -12.52 -0.06 -15.62 16 17 C 0.32 7.29 12.27 -92.29 -1.13 6.16 16 18 N -0.62 -13.65 9.92 -10.88 -0.11 -13.76 16 19 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.08 1.33 7.83 -51.93 -0.41 0.92 16 23 H 0.06 1.02 7.38 -51.93 -0.38 0.63 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 28 H 0.11 2.40 8.01 -52.49 -0.42 1.98 16 29 H 0.28 7.27 8.72 -40.82 -0.36 6.91 16 30 H 0.17 3.14 8.06 -52.49 -0.42 2.72 16 LS Contribution 254.43 15.07 3.83 3.83 Total: -1.00 -28.37 254.43 -6.76 -35.13 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -4.18 Total: -3.35 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.65 Total: -9.48 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.59 Total: -49.92 kcal Atomic # 14 Polarization: 28.14 SS G_CDS: -4.35 Total: 23.79 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.37 -6.76 -35.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260671436.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.756 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds