Wall clock time and date at job start Thu Apr 9 2020 14:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46880 * 2 1 4 4 N 1.31805 * 119.12225 * 269.97871 * 3 2 1 5 5 C 1.32324 * 120.81251 * 180.02562 * 4 3 2 6 6 C 1.38616 * 119.10776 * 359.74824 * 5 4 3 7 7 C 1.38579 * 118.39442 * 0.51532 * 6 5 4 8 8 C 1.50707 * 120.44246 * 179.76318 * 7 6 5 9 9 H 1.08997 * 109.46649 * 204.71619 * 8 7 6 10 10 C 1.52994 * 109.47019 * 324.71806 * 8 7 6 11 11 C 1.50695 * 109.47014 * 84.72076 * 8 7 6 12 12 H 1.08004 * 120.00546 * 0.27454 * 11 8 7 13 13 C 1.37885 * 119.99721 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99913 * 179.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 8 16 16 H 1.48493 * 109.47326 * 90.00142 * 15 13 11 17 17 H 1.48506 * 109.46545 * 209.99892 * 15 13 11 18 18 H 1.48498 * 109.47210 * 329.99603 * 15 13 11 19 19 N 1.31782 * 119.12305 * 90.00146 * 3 2 1 20 20 H 1.09000 * 109.47599 * 59.99829 * 1 2 3 21 21 H 1.08999 * 109.47110 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47029 * 299.99248 * 1 2 3 23 23 H 1.09004 * 109.46853 * 240.00233 * 2 1 3 24 24 H 1.08993 * 109.47196 * 120.00085 * 2 1 3 25 25 H 1.08001 * 120.44351 * 179.97438 * 5 4 3 26 26 H 1.07999 * 120.80339 * 180.25231 * 6 5 4 27 27 H 1.09002 * 109.47168 * 60.00598 * 10 8 7 28 28 H 1.08998 * 109.46887 * 180.02562 * 10 8 7 29 29 H 1.09005 * 109.47504 * 300.00247 * 10 8 7 30 30 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2465 2.0255 -1.1514 5 6 2.6878 3.2723 -1.1905 6 6 2.9194 3.9432 0.0002 7 6 2.6880 3.2723 1.1905 8 6 2.9296 3.9558 2.5117 9 1 3.1247 3.2059 3.2783 10 6 4.1371 4.8875 2.3906 11 6 1.7121 4.7581 2.8923 12 1 0.8478 4.7683 2.2446 13 6 1.6991 5.4743 4.0705 14 7 0.6368 6.1750 4.4024 15 14 3.1910 5.4506 5.1944 16 1 4.1091 6.5566 4.8218 17 1 2.7525 5.6243 6.6025 18 1 3.8971 4.1520 5.0524 19 7 2.2461 2.0255 1.1512 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.8617 3.7619 -2.1373 26 1 3.2758 4.9627 0.0003 27 1 3.9419 5.6374 1.6241 28 1 4.3121 5.3814 3.3464 29 1 5.0177 4.3071 2.1153 30 1 0.6278 6.6791 5.2310 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260752591.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:17 Heat of formation + Delta-G solvation = 35.537982 kcal Electronic energy + Delta-G solvation = -13136.289959 eV Core-core repulsion = 10931.452512 eV Total energy + Delta-G solvation = -2204.837448 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.52232 -35.51209 -33.72620 -32.64352 -31.29515 -29.47491 -25.42063 -24.48915 -24.00401 -21.95138 -19.82557 -17.17836 -16.59972 -16.00112 -14.92098 -14.77359 -14.16380 -13.79592 -13.46710 -13.01042 -12.81770 -12.36660 -12.10854 -11.57739 -11.37686 -11.14986 -10.90750 -10.76740 -10.35371 -10.05376 -9.98792 -9.57820 -9.26956 -8.69150 -8.64817 -8.55603 -6.16935 -4.18581 1.50377 1.74190 3.20681 3.32837 3.34833 4.29168 4.31940 4.39505 4.64370 5.13045 5.18430 5.42428 5.44716 5.53793 5.65712 5.78865 5.99750 6.02745 6.11185 6.22433 6.25934 6.38686 6.48072 6.57408 6.82080 7.05412 7.18812 7.55477 7.70727 8.36174 8.74029 8.83221 9.41393 10.95665 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.040427 B = 0.009519 C = 0.008757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.439212 B = 2940.685883 C = 3196.797427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C 0.308 3.692 4 N -0.541 5.541 5 C 0.135 3.865 6 C -0.231 4.231 7 C 0.231 3.769 8 C 0.048 3.952 9 H 0.053 0.947 10 C -0.148 4.148 11 C -0.508 4.508 12 H 0.073 0.927 13 C 0.075 3.925 14 N -0.894 5.894 15 Si 0.889 3.111 16 H -0.277 1.277 17 H -0.295 1.295 18 H -0.264 1.264 19 N -0.518 5.518 20 H 0.055 0.945 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.159 0.841 26 H 0.145 0.855 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.033 0.967 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.828 -6.928 -7.754 11.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C 0.040 3.960 4 N -0.256 5.256 5 C -0.029 4.029 6 C -0.253 4.253 7 C 0.086 3.914 8 C 0.028 3.972 9 H 0.071 0.929 10 C -0.206 4.206 11 C -0.546 4.546 12 H 0.091 0.909 13 C -0.128 4.128 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.204 1.204 17 H -0.222 1.222 18 H -0.189 1.189 19 N -0.232 5.232 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.104 0.896 25 H 0.176 0.824 26 H 0.163 0.837 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.413 -7.736 -7.626 11.725 hybrid contribution 0.965 1.209 0.610 1.663 sum 5.378 -6.528 -7.016 10.989 Atomic orbital electron populations 1.21676 0.93946 1.01856 1.02644 1.20242 0.96584 0.88726 1.03370 1.23106 0.91988 0.97015 0.83910 1.68111 1.15812 1.11042 1.30643 1.23043 0.91510 0.90052 0.98288 1.22787 1.05315 1.03076 0.94107 1.22124 0.84650 0.87860 0.96782 1.18346 0.95758 0.94403 0.88658 0.92940 1.22233 0.97150 0.99917 1.01290 1.20638 0.99085 1.28062 1.06846 0.90903 1.24935 0.96118 0.94572 0.97132 1.69874 1.28626 1.30435 1.24209 0.86822 0.82817 0.79047 0.79447 1.20386 1.22196 1.18932 1.68142 1.14049 1.11248 1.29745 0.92579 0.91947 0.91982 0.89919 0.89592 0.82370 0.83692 0.92239 0.93315 0.94788 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.89 37.16 0.37 -1.56 16 2 C -0.05 -0.73 6.37 -27.88 -0.18 -0.91 16 3 C 0.31 5.78 6.90 -157.20 -1.08 4.69 16 4 N -0.54 -9.76 10.34 -10.72 -0.11 -9.87 16 5 C 0.14 2.26 11.31 -17.20 -0.19 2.06 16 6 C -0.23 -4.30 9.26 -39.32 -0.36 -4.67 16 7 C 0.23 5.05 5.76 -82.24 -0.47 4.58 16 8 C 0.05 1.14 2.24 -92.93 -0.21 0.93 16 9 H 0.05 1.30 7.20 -51.93 -0.37 0.93 16 10 C -0.15 -3.07 8.13 37.15 0.30 -2.76 16 11 C -0.51 -14.15 9.13 -34.44 -0.31 -14.47 16 12 H 0.07 2.25 7.98 -52.48 -0.42 1.83 16 13 C 0.08 2.12 5.45 -17.82 -0.10 2.03 16 14 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 15 Si 0.89 21.37 24.37 -169.99 -4.14 17.23 16 16 H -0.28 -6.38 6.87 56.52 0.39 -6.00 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 18 H -0.26 -6.12 6.53 56.52 0.37 -5.75 16 19 N -0.52 -11.18 10.27 -6.99 -0.07 -11.25 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 26 H 0.15 2.43 6.45 -52.49 -0.34 2.09 16 27 H 0.06 1.14 6.58 -51.93 -0.34 0.80 16 28 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 250.58 15.07 3.78 3.78 Total: -1.00 -31.06 250.58 -5.80 -36.87 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -3.78 Total: -0.55 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -2.24 Total: -10.08 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.59 Total: -47.25 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.14 Total: 17.23 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.06 -5.80 -36.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260752591.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.406 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds