Wall clock time and date at job start Thu Apr 9 2020 14:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46880 * 2 1 4 4 N 1.31805 * 119.12225 * 269.97871 * 3 2 1 5 5 C 1.32324 * 120.81251 * 180.02562 * 4 3 2 6 6 C 1.38616 * 119.10776 * 359.74824 * 5 4 3 7 7 C 1.38579 * 118.39442 * 0.51532 * 6 5 4 8 8 C 1.50707 * 120.44246 * 179.76318 * 7 6 5 9 9 H 1.08997 * 109.46649 * 204.71619 * 8 7 6 10 10 C 1.52994 * 109.47019 * 324.71806 * 8 7 6 11 11 C 1.50695 * 109.47014 * 84.72076 * 8 7 6 12 12 H 1.08004 * 120.00546 * 0.27454 * 11 8 7 13 13 C 1.37885 * 119.99721 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99913 * 179.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 8 16 16 H 1.48493 * 109.47326 * 90.00142 * 15 13 11 17 17 H 1.48506 * 109.46545 * 209.99892 * 15 13 11 18 18 H 1.48498 * 109.47210 * 329.99603 * 15 13 11 19 19 N 1.31782 * 119.12305 * 90.00146 * 3 2 1 20 20 H 1.09000 * 109.47599 * 59.99829 * 1 2 3 21 21 H 1.08999 * 109.47110 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47029 * 299.99248 * 1 2 3 23 23 H 1.09004 * 109.46853 * 240.00233 * 2 1 3 24 24 H 1.08993 * 109.47196 * 120.00085 * 2 1 3 25 25 H 1.08001 * 120.44351 * 179.97438 * 5 4 3 26 26 H 1.07999 * 120.80339 * 180.25231 * 6 5 4 27 27 H 1.09002 * 109.47168 * 60.00598 * 10 8 7 28 28 H 1.08998 * 109.46887 * 180.02562 * 10 8 7 29 29 H 1.09005 * 109.47504 * 300.00247 * 10 8 7 30 30 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2465 2.0255 -1.1514 5 6 2.6878 3.2723 -1.1905 6 6 2.9194 3.9432 0.0002 7 6 2.6880 3.2723 1.1905 8 6 2.9296 3.9558 2.5117 9 1 3.1247 3.2059 3.2783 10 6 4.1371 4.8875 2.3906 11 6 1.7121 4.7581 2.8923 12 1 0.8478 4.7683 2.2446 13 6 1.6991 5.4743 4.0705 14 7 0.6368 6.1750 4.4024 15 14 3.1910 5.4506 5.1944 16 1 4.1091 6.5566 4.8218 17 1 2.7525 5.6243 6.6025 18 1 3.8971 4.1520 5.0524 19 7 2.2461 2.0255 1.1512 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.8617 3.7619 -2.1373 26 1 3.2758 4.9627 0.0003 27 1 3.9419 5.6374 1.6241 28 1 4.3121 5.3814 3.3464 29 1 5.0177 4.3071 2.1153 30 1 0.6278 6.6791 5.2310 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260752591.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:17 Heat of formation + Delta-G solvation = 14.511374 kcal Electronic energy + Delta-G solvation = -13137.201742 eV Core-core repulsion = 10931.452512 eV Total energy + Delta-G solvation = -2205.749230 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.98020 -37.20772 -35.05728 -34.46383 -33.02666 -30.93466 -27.28635 -25.96481 -25.53914 -23.36246 -21.46945 -18.95572 -18.38822 -17.56409 -16.59243 -16.24887 -15.67028 -15.07967 -14.97964 -14.78111 -14.35555 -14.13914 -13.44585 -13.10647 -13.00062 -12.64537 -12.59257 -12.07172 -11.99995 -11.74198 -11.54696 -11.42397 -11.10499 -10.79052 -10.19118 -10.06670 -8.35196 -6.42159 0.06974 0.25469 1.30119 1.37933 1.48099 2.29373 2.85840 2.97317 3.09128 3.26271 3.77303 4.12474 4.23635 4.28617 4.37313 4.39216 4.55720 4.62471 4.72394 4.90745 4.93780 4.97353 5.07375 5.19649 5.28231 5.45196 5.51346 5.62662 6.16299 6.22790 6.60190 7.21759 7.27408 8.81438 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.040427 B = 0.009519 C = 0.008757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.439212 B = 2940.685883 C = 3196.797427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C 0.296 3.704 4 N -0.542 5.542 5 C 0.146 3.854 6 C -0.236 4.236 7 C 0.198 3.802 8 C 0.049 3.951 9 H 0.036 0.964 10 C -0.143 4.143 11 C -0.511 4.511 12 H 0.022 0.978 13 C 0.018 3.982 14 N -0.944 5.944 15 Si 0.954 3.046 16 H -0.254 1.254 17 H -0.297 1.297 18 H -0.250 1.250 19 N -0.551 5.551 20 H 0.051 0.949 21 H 0.095 0.905 22 H 0.033 0.967 23 H 0.107 0.893 24 H 0.091 0.909 25 H 0.207 0.793 26 H 0.162 0.838 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.749 -7.597 -8.995 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C 0.029 3.971 4 N -0.257 5.257 5 C -0.018 4.018 6 C -0.257 4.257 7 C 0.054 3.946 8 C 0.029 3.971 9 H 0.054 0.946 10 C -0.200 4.200 11 C -0.549 4.549 12 H 0.041 0.959 13 C -0.180 4.180 14 N -0.583 5.583 15 Si 0.780 3.220 16 H -0.179 1.179 17 H -0.225 1.225 18 H -0.174 1.174 19 N -0.266 5.266 20 H 0.070 0.930 21 H 0.114 0.886 22 H 0.053 0.947 23 H 0.126 0.874 24 H 0.109 0.891 25 H 0.224 0.776 26 H 0.180 0.820 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.345 -8.416 -8.882 13.783 hybrid contribution 0.259 1.362 0.872 1.638 sum 6.604 -7.054 -8.010 12.551 Atomic orbital electron populations 1.21644 0.93282 1.03571 1.01019 1.20425 0.96999 0.86640 1.04823 1.23861 0.91345 0.98475 0.83419 1.68260 1.15710 1.11692 1.30034 1.23801 0.89179 0.89412 0.99453 1.22979 1.05288 1.03788 0.93694 1.22011 0.86797 0.88743 0.97083 1.18195 0.95107 0.94095 0.89652 0.94572 1.22127 0.96714 0.99782 1.01406 1.20786 0.99344 1.28567 1.06209 0.95915 1.25840 0.99342 0.94005 0.98784 1.70028 1.31240 1.31942 1.25140 0.85770 0.79198 0.80376 0.76665 1.17927 1.22479 1.17428 1.68097 1.15176 1.11752 1.31547 0.92967 0.88580 0.94740 0.87421 0.89101 0.77638 0.82013 0.91086 0.93970 0.91696 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.89 71.98 0.71 -2.81 16 2 C -0.05 -1.37 6.37 29.85 0.19 -1.18 16 3 C 0.30 10.82 6.90 138.75 0.96 11.77 16 4 N -0.54 -18.34 10.34 -187.84 -1.94 -20.29 16 5 C 0.15 4.46 11.31 84.71 0.96 5.42 16 6 C -0.24 -8.40 9.26 22.44 0.21 -8.20 16 7 C 0.20 8.63 5.76 42.57 0.24 8.88 16 8 C 0.05 2.33 2.24 -12.29 -0.03 2.30 16 9 H 0.04 1.80 7.20 -2.39 -0.02 1.78 16 10 C -0.14 -5.60 8.13 71.98 0.58 -5.01 16 11 C -0.51 -29.37 9.13 25.60 0.23 -29.14 16 12 H 0.02 1.48 7.98 -2.91 -0.02 1.46 16 13 C 0.02 1.05 5.45 84.66 0.46 1.51 16 14 N -0.94 -58.64 13.96 21.45 0.30 -58.35 16 15 Si 0.95 43.93 24.37 68.60 1.67 45.60 16 16 H -0.25 -10.71 6.87 99.48 0.68 -10.03 16 17 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 18 H -0.25 -10.85 6.53 99.48 0.65 -10.20 16 19 N -0.55 -23.87 10.27 -176.03 -1.81 -25.68 16 20 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.21 4.17 8.06 -2.91 -0.02 4.14 16 26 H 0.16 5.06 6.45 -2.91 -0.02 5.05 16 27 H 0.07 2.58 6.58 -2.39 -0.02 2.56 16 28 H 0.04 1.69 3.27 -2.39 -0.01 1.69 16 29 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -69.67 250.58 3.79 -65.88 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.05 Total: 9.28 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 4.52 Total: -16.45 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -3.45 Total: -104.31 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.67 Total: 45.60 kcal Total: -69.67 3.79 -65.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260752591.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.396 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds