Wall clock time and date at job start Thu Apr 9 2020 14:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38619 * 120.44902 * 2 1 4 4 C 1.38584 * 118.40176 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.44952 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47078 * 285.00141 * 5 4 3 7 7 C 1.53006 * 109.46866 * 44.99964 * 5 4 3 8 8 C 1.50697 * 109.46956 * 164.99849 * 5 4 3 9 9 H 1.07999 * 120.00055 * 0.02562 * 8 5 4 10 10 C 1.37878 * 119.99687 * 180.02562 * 8 5 4 11 11 N 1.31511 * 120.00458 * 359.97438 * 10 8 5 12 12 Si 1.86805 * 119.99926 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.46980 * 89.99582 * 12 10 8 14 14 H 1.48493 * 109.47135 * 209.99651 * 12 10 8 15 15 H 1.48498 * 109.47274 * 330.00048 * 12 10 8 16 16 N 1.32353 * 119.10313 * 0.27294 * 4 3 2 17 17 C 1.31784 * 120.81479 * 359.44429 * 16 4 3 18 18 N 1.31808 * 121.75815 * 0.57167 * 17 16 4 19 19 H 1.08994 * 109.47452 * 90.00213 * 1 2 3 20 20 H 1.09001 * 109.46926 * 210.00081 * 1 2 3 21 21 H 1.09003 * 109.47304 * 329.99579 * 1 2 3 22 22 H 1.08000 * 120.80014 * 0.05085 * 3 2 1 23 23 H 1.09002 * 109.47153 * 299.99793 * 6 5 4 24 24 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 25 25 H 1.09004 * 109.47261 * 59.99965 * 6 5 4 26 26 H 1.08993 * 109.46955 * 300.00219 * 7 5 4 27 27 H 1.09000 * 109.47050 * 60.00048 * 7 5 4 28 28 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 29 29 H 0.96999 * 120.00480 * 179.97438 * 11 10 8 30 30 H 1.08007 * 119.11973 * 180.26489 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5944 1.1455 -0.0005 5 6 4.4040 2.4165 0.0000 6 6 4.3626 3.0482 -1.3929 7 6 3.8180 3.3940 1.0209 8 6 5.8315 2.1026 0.3670 9 1 6.1233 1.0845 0.5783 10 6 6.7649 3.1152 0.4331 11 7 6.4097 4.3549 0.1753 12 14 8.5346 2.7261 0.8874 13 1 9.3083 2.4301 -0.3451 14 1 9.1358 3.8934 1.5809 15 1 8.5665 1.5452 1.7873 16 7 4.1964 -0.0332 -0.0066 17 6 3.4956 -1.1492 -0.0010 18 7 2.1775 -1.1407 -0.0005 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5139 22 1 1.6899 2.1419 0.0008 23 1 4.7800 2.3518 -2.1202 24 1 4.9478 3.9678 -1.3923 25 1 3.3300 3.2752 -1.6583 26 1 2.7855 3.6209 0.7555 27 1 3.8475 2.9439 2.0133 28 1 4.4039 4.3132 1.0217 29 1 7.0662 5.0674 0.2222 30 1 4.0151 -2.0961 -0.0018 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260756687.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:18 Heat of formation + Delta-G solvation = 36.749968 kcal Electronic energy + Delta-G solvation = -13414.636153 eV Core-core repulsion = 11209.851261 eV Total energy + Delta-G solvation = -2204.784892 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.40954 -35.94269 -33.51406 -32.05643 -30.16460 -27.87948 -25.78670 -25.28863 -23.57122 -22.31170 -19.16168 -17.09104 -15.81165 -15.42848 -14.80333 -14.48106 -14.46692 -13.13225 -12.80649 -12.76237 -12.49473 -12.20508 -11.82705 -11.29077 -11.08488 -10.68541 -10.58743 -10.27840 -10.23215 -10.00118 -9.76871 -9.42859 -8.87210 -8.70514 -8.32820 -8.27802 -5.95563 -4.01161 1.58868 1.82283 3.34426 3.40657 3.46327 4.45003 4.48857 4.53568 4.91905 5.07478 5.32714 5.50010 5.66709 5.73457 5.85446 6.05145 6.14464 6.43872 6.61085 6.74603 6.81385 6.87558 7.18303 7.20060 7.45943 7.66639 7.84336 7.92132 8.16175 8.41410 8.90095 9.06470 9.63639 11.07622 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.048061 B = 0.010143 C = 0.008943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.454622 B = 2759.752337 C = 3130.176497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.154 3.846 3 C -0.237 4.237 4 C 0.225 3.775 5 C 0.100 3.900 6 C -0.124 4.124 7 C -0.128 4.128 8 C -0.489 4.489 9 H 0.076 0.924 10 C 0.058 3.942 11 N -0.896 5.896 12 Si 0.896 3.104 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.275 1.275 16 N -0.501 5.501 17 C 0.280 3.720 18 N -0.548 5.548 19 H 0.077 0.923 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.138 0.862 23 H 0.028 0.972 24 H 0.095 0.905 25 H 0.011 0.989 26 H 0.014 0.986 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.259 0.741 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 -4.100 -0.492 9.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.009 3.991 3 C -0.259 4.259 4 C 0.080 3.920 5 C 0.099 3.901 6 C -0.182 4.182 7 C -0.186 4.186 8 C -0.527 4.527 9 H 0.094 0.906 10 C -0.141 4.141 11 N -0.536 5.536 12 Si 0.724 3.276 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.200 1.200 16 N -0.214 5.214 17 C -0.008 4.008 18 N -0.264 5.264 19 H 0.095 0.905 20 H 0.094 0.906 21 H 0.093 0.907 22 H 0.156 0.844 23 H 0.047 0.953 24 H 0.114 0.886 25 H 0.030 0.970 26 H 0.033 0.967 27 H 0.046 0.954 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -7.642 -4.790 -0.498 9.033 hybrid contribution 0.566 0.522 0.221 0.800 sum -7.077 -4.269 -0.277 8.269 Atomic orbital electron populations 1.20676 0.88885 1.03247 1.02909 1.21543 0.96931 0.88761 0.91832 1.22672 0.96781 0.99716 1.06722 1.22690 0.90610 0.95278 0.83437 1.17392 0.93886 0.84945 0.93906 1.21794 0.97796 1.02976 0.95647 1.21869 0.96949 1.02573 0.97248 1.21198 0.91584 0.94881 1.45058 0.90592 1.24927 0.98779 0.95020 0.95406 1.69783 1.33958 0.99470 1.50392 0.86520 0.84825 0.77693 0.78527 1.20821 1.21478 1.19955 1.68463 1.41213 0.98501 1.13237 1.24930 0.86644 0.97461 0.91770 1.68123 1.10796 1.30374 1.17152 0.90452 0.90633 0.90658 0.84386 0.95274 0.88628 0.97008 0.96745 0.95361 0.88678 0.93102 0.79871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.22 36.00 0.37 -0.85 16 2 C 0.15 2.66 6.82 -82.24 -0.56 2.10 16 3 C -0.24 -4.49 8.90 -39.31 -0.35 -4.84 16 4 C 0.22 5.04 5.56 -82.24 -0.46 4.58 16 5 C 0.10 2.43 0.61 -156.81 -0.10 2.33 16 6 C -0.12 -2.92 8.19 37.16 0.30 -2.62 16 7 C -0.13 -2.96 7.88 37.16 0.29 -2.67 16 8 C -0.49 -13.26 7.80 -34.44 -0.27 -13.53 16 9 H 0.08 2.14 6.73 -52.49 -0.35 1.78 16 10 C 0.06 1.57 5.15 -17.82 -0.09 1.48 16 11 N -0.90 -24.25 9.35 55.43 0.52 -23.73 16 12 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 16 N -0.50 -11.23 8.77 -10.80 -0.09 -11.33 16 17 C 0.28 5.33 12.28 -92.15 -1.13 4.19 16 18 N -0.55 -10.04 10.38 -10.80 -0.11 -10.16 16 19 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 20 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 22 H 0.14 2.35 6.84 -52.49 -0.36 1.99 16 23 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 25 H 0.01 0.23 8.12 -51.93 -0.42 -0.19 16 26 H 0.01 0.28 6.79 -51.93 -0.35 -0.07 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.18 2.80 8.06 -52.48 -0.42 2.38 16 LS Contribution 250.42 15.07 3.77 3.77 Total: -1.00 -28.93 250.42 -6.71 -35.64 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -3.79 Total: -0.76 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -1.99 Total: -9.83 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.31 Total: -45.22 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.93 -6.71 -35.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260756687.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.393 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds