Wall clock time and date at job start Thu Apr 9 2020 14:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38619 * 120.44902 * 2 1 4 4 C 1.38584 * 118.40176 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.44952 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47078 * 285.00141 * 5 4 3 7 7 C 1.53006 * 109.46866 * 44.99964 * 5 4 3 8 8 C 1.50697 * 109.46956 * 164.99849 * 5 4 3 9 9 H 1.07999 * 120.00055 * 0.02562 * 8 5 4 10 10 C 1.37878 * 119.99687 * 180.02562 * 8 5 4 11 11 N 1.31511 * 120.00458 * 359.97438 * 10 8 5 12 12 Si 1.86805 * 119.99926 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.46980 * 89.99582 * 12 10 8 14 14 H 1.48493 * 109.47135 * 209.99651 * 12 10 8 15 15 H 1.48498 * 109.47274 * 330.00048 * 12 10 8 16 16 N 1.32353 * 119.10313 * 0.27294 * 4 3 2 17 17 C 1.31784 * 120.81479 * 359.44429 * 16 4 3 18 18 N 1.31808 * 121.75815 * 0.57167 * 17 16 4 19 19 H 1.08994 * 109.47452 * 90.00213 * 1 2 3 20 20 H 1.09001 * 109.46926 * 210.00081 * 1 2 3 21 21 H 1.09003 * 109.47304 * 329.99579 * 1 2 3 22 22 H 1.08000 * 120.80014 * 0.05085 * 3 2 1 23 23 H 1.09002 * 109.47153 * 299.99793 * 6 5 4 24 24 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 25 25 H 1.09004 * 109.47261 * 59.99965 * 6 5 4 26 26 H 1.08993 * 109.46955 * 300.00219 * 7 5 4 27 27 H 1.09000 * 109.47050 * 60.00048 * 7 5 4 28 28 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 29 29 H 0.96999 * 120.00480 * 179.97438 * 11 10 8 30 30 H 1.08007 * 119.11973 * 180.26489 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5944 1.1455 -0.0005 5 6 4.4040 2.4165 0.0000 6 6 4.3626 3.0482 -1.3929 7 6 3.8180 3.3940 1.0209 8 6 5.8315 2.1026 0.3670 9 1 6.1233 1.0845 0.5783 10 6 6.7649 3.1152 0.4331 11 7 6.4097 4.3549 0.1753 12 14 8.5346 2.7261 0.8874 13 1 9.3083 2.4301 -0.3451 14 1 9.1358 3.8934 1.5809 15 1 8.5665 1.5452 1.7873 16 7 4.1964 -0.0332 -0.0066 17 6 3.4956 -1.1492 -0.0010 18 7 2.1775 -1.1407 -0.0005 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5139 22 1 1.6899 2.1419 0.0008 23 1 4.7800 2.3518 -2.1202 24 1 4.9478 3.9678 -1.3923 25 1 3.3300 3.2752 -1.6583 26 1 2.7855 3.6209 0.7555 27 1 3.8475 2.9439 2.0133 28 1 4.4039 4.3132 1.0217 29 1 7.0662 5.0674 0.2222 30 1 4.0151 -2.0961 -0.0018 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260756687.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:18 Heat of formation + Delta-G solvation = 20.644174 kcal Electronic energy + Delta-G solvation = -13415.334553 eV Core-core repulsion = 11209.851261 eV Total energy + Delta-G solvation = -2205.483291 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.89392 -37.71528 -34.95709 -33.84893 -31.83086 -29.14492 -27.63755 -27.24400 -25.17080 -23.77864 -20.90204 -18.73562 -17.38844 -17.30679 -16.29052 -16.24153 -15.86422 -14.91556 -14.54619 -14.05549 -13.88830 -13.46920 -13.23013 -13.13708 -12.98331 -12.54548 -12.49355 -12.17624 -11.83487 -11.80188 -11.61483 -10.99293 -10.71334 -10.37493 -10.20092 -9.85732 -7.99079 -6.09948 0.14868 0.32559 1.42370 1.44544 1.54030 2.48374 2.99134 3.25797 3.27643 3.45195 3.72859 4.21429 4.37963 4.59793 4.65005 4.79055 4.81093 4.87653 4.94400 5.06643 5.07829 5.22669 5.30467 5.55802 5.61768 5.82205 6.02068 6.09725 6.32646 6.51827 6.95497 7.39909 7.57350 9.01460 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.048061 B = 0.010143 C = 0.008943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.454622 B = 2759.752337 C = 3130.176497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.159 3.841 3 C -0.240 4.240 4 C 0.197 3.803 5 C 0.090 3.910 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.506 4.506 9 H 0.057 0.943 10 C 0.020 3.980 11 N -0.908 5.908 12 Si 0.945 3.055 13 H -0.281 1.281 14 H -0.282 1.282 15 H -0.279 1.279 16 N -0.541 5.541 17 C 0.276 3.724 18 N -0.549 5.549 19 H 0.097 0.903 20 H 0.085 0.915 21 H 0.097 0.903 22 H 0.159 0.841 23 H 0.013 0.987 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.045 0.955 27 H 0.017 0.983 28 H 0.071 0.929 29 H 0.259 0.741 30 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.891 -4.609 -0.487 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.014 3.986 3 C -0.261 4.261 4 C 0.053 3.947 5 C 0.089 3.911 6 C -0.171 4.171 7 C -0.175 4.175 8 C -0.544 4.544 9 H 0.075 0.925 10 C -0.178 4.178 11 N -0.548 5.548 12 Si 0.773 3.227 13 H -0.207 1.207 14 H -0.208 1.208 15 H -0.204 1.204 16 N -0.255 5.255 17 C -0.012 4.012 18 N -0.266 5.266 19 H 0.116 0.884 20 H 0.104 0.896 21 H 0.116 0.884 22 H 0.176 0.824 23 H 0.033 0.967 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -9.333 -5.293 -0.494 10.741 hybrid contribution 1.026 0.617 0.210 1.216 sum -8.307 -4.676 -0.284 9.537 Atomic orbital electron populations 1.20835 0.84943 1.04920 1.04640 1.22345 0.99310 0.87688 0.89298 1.22828 0.95351 1.01456 1.06514 1.22461 0.92027 0.94576 0.85661 1.17366 0.93010 0.86582 0.94112 1.21626 0.98839 1.01376 0.95283 1.21694 0.98280 1.01020 0.96523 1.21374 0.93680 0.94055 1.45315 0.92465 1.25488 1.01587 0.95105 0.95653 1.69883 1.34607 0.99720 1.50632 0.85754 0.81504 0.77381 0.78097 1.20720 1.20794 1.20384 1.68366 1.42783 0.99456 1.14916 1.25468 0.87241 0.97567 0.90903 1.68276 1.10366 1.30872 1.17072 0.88436 0.89587 0.88412 0.82379 0.96749 0.90772 0.94382 0.93654 0.96339 0.90982 0.93129 0.77132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.94 10.22 71.23 0.73 -1.21 16 2 C 0.16 5.00 6.82 42.57 0.29 5.29 16 3 C -0.24 -8.55 8.90 22.44 0.20 -8.35 16 4 C 0.20 8.70 5.56 42.56 0.24 8.93 16 5 C 0.09 4.40 0.61 -53.67 -0.03 4.36 16 6 C -0.11 -5.32 8.19 71.98 0.59 -4.73 16 7 C -0.12 -5.35 7.88 71.98 0.57 -4.78 16 8 C -0.51 -27.92 7.80 25.60 0.20 -27.72 16 9 H 0.06 3.31 6.73 -2.91 -0.02 3.29 16 10 C 0.02 1.07 5.15 84.66 0.44 1.51 16 11 N -0.91 -49.66 9.35 21.45 0.20 -49.46 16 12 Si 0.95 44.42 29.54 68.60 2.03 46.44 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 16 N -0.54 -24.21 8.77 -188.07 -1.65 -25.85 16 17 C 0.28 10.17 12.28 180.88 2.22 12.39 16 18 N -0.55 -18.88 10.38 -188.07 -1.95 -20.83 16 19 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 20 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.10 1.57 8.10 -2.39 -0.02 1.55 16 22 H 0.16 4.84 6.84 -2.91 -0.02 4.82 16 23 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 25 H 0.04 1.53 8.12 -2.38 -0.02 1.51 16 26 H 0.04 1.73 6.79 -2.39 -0.02 1.71 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 29 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 30 H 0.21 6.16 8.06 -2.91 -0.02 6.14 16 Total: -1.00 -62.24 250.42 5.19 -57.05 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.13 Total: 6.95 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 5.44 Total: -14.30 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -3.40 Total: -96.14 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -62.24 5.19 -57.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260756687.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.694 kcal (2) G-P(sol) polarization free energy of solvation -62.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds