Wall clock time and date at job start Thu Apr 9 2020 14:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46956 * 2 1 4 4 C 1.50703 * 109.46927 * 240.00273 * 2 1 3 5 5 H 1.08001 * 119.99994 * 240.00231 * 4 2 1 6 6 C 1.37876 * 120.00342 * 60.00106 * 4 2 1 7 7 N 1.31514 * 119.99527 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00201 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47504 * 89.99582 * 8 6 4 10 10 H 1.48506 * 109.47023 * 210.00275 * 8 6 4 11 11 H 1.48503 * 109.46937 * 329.99589 * 8 6 4 12 12 C 1.50696 * 109.46905 * 120.00359 * 2 1 3 13 13 C 1.39867 * 126.04245 * 59.99737 * 12 2 1 14 14 N 1.30834 * 108.20347 * 179.97438 * 13 12 2 15 15 N 1.40082 * 108.20758 * 0.02562 * 14 13 12 16 16 C 1.46500 * 126.04008 * 180.02562 * 15 14 13 17 17 C 1.53006 * 117.49889 * 163.59899 * 16 15 14 18 18 C 1.53005 * 117.49664 * 94.97537 * 16 15 14 19 19 C 1.34954 * 107.92310 * 0.02562 * 15 14 13 20 20 H 1.09002 * 109.46643 * 59.99609 * 1 2 3 21 21 H 1.08997 * 109.47169 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46782 * 300.00420 * 1 2 3 23 23 H 0.97004 * 119.99693 * 179.97438 * 7 6 4 24 24 H 1.08000 * 125.89932 * 0.02562 * 13 12 2 25 25 H 1.09002 * 115.54878 * 309.30692 * 16 15 14 26 26 H 1.09003 * 117.49632 * 359.97438 * 17 16 15 27 27 H 1.08999 * 117.49776 * 145.02306 * 17 16 15 28 28 H 1.08997 * 117.49543 * 214.97458 * 18 16 15 29 29 H 1.08993 * 117.49979 * 359.97438 * 18 16 15 30 30 H 1.08001 * 126.12517 * 179.73977 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7123 12 6 2.0323 -0.7105 1.2304 13 6 1.7734 -2.0409 1.5758 14 7 2.3780 -2.2942 2.7081 15 7 3.0412 -1.1311 3.1200 16 6 3.8414 -0.9806 4.3379 17 6 4.7850 0.2211 4.4192 18 6 5.3531 -1.1856 4.2197 19 6 2.8127 -0.1737 2.1968 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.7088 1.1614 -3.4844 24 1 1.1781 -2.7388 1.0058 25 1 3.3599 -1.3062 5.2600 26 1 4.8106 0.8994 3.5664 27 1 4.9243 0.6864 5.3950 28 1 5.8661 -1.6455 5.0643 29 1 5.7520 -1.4327 3.2360 30 1 3.1836 0.8402 2.2258 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260794514.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:23 Heat of formation + Delta-G solvation = 99.127560 kcal Electronic energy + Delta-G solvation = -13016.306079 eV Core-core repulsion = 10814.226083 eV Total energy + Delta-G solvation = -2202.079997 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.52243 -37.03725 -34.19140 -31.12728 -30.15446 -27.80558 -25.01356 -23.01765 -22.62598 -21.38511 -19.62752 -19.01504 -16.74232 -15.84940 -15.52545 -14.55350 -14.00324 -13.55959 -13.08866 -12.72641 -12.46390 -11.98822 -11.63018 -11.31775 -10.94176 -10.90668 -10.76693 -10.66183 -10.29686 -10.18412 -9.87154 -9.37168 -8.88067 -8.63944 -8.28222 -7.35505 -5.92385 -3.97811 2.54558 2.93721 3.34692 3.41196 3.45087 3.63010 3.77798 4.50564 4.57017 4.70076 4.88424 5.36378 5.39173 5.45087 5.66923 5.71975 5.91656 5.98109 6.45833 6.61740 6.84068 7.01446 7.18352 7.37141 7.54074 7.74807 7.82805 8.02718 8.21056 8.45259 8.56485 9.05254 9.66403 11.13192 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.045175 B = 0.008014 C = 0.007706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.658526 B = 3492.968683 C = 3632.854574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.106 3.894 3 H 0.029 0.971 4 C -0.501 4.501 5 H 0.055 0.945 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.890 3.110 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 C -0.170 4.170 13 C 0.056 3.944 14 N -0.313 5.313 15 N -0.365 5.365 16 C 0.096 3.904 17 C -0.173 4.173 18 C -0.183 4.183 19 C 0.019 3.981 20 H 0.082 0.918 21 H 0.026 0.974 22 H 0.006 0.994 23 H 0.259 0.741 24 H 0.178 0.822 25 H 0.129 0.871 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.191 -0.756 11.156 12.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.087 3.913 3 H 0.047 0.953 4 C -0.539 4.539 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.718 3.282 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.181 4.181 13 C -0.130 4.130 14 N -0.134 5.134 15 N -0.149 5.149 16 C -0.008 4.008 17 C -0.211 4.211 18 C -0.221 4.221 19 C -0.123 4.123 20 H 0.101 0.899 21 H 0.045 0.955 22 H 0.025 0.975 23 H 0.069 0.931 24 H 0.195 0.805 25 H 0.147 0.853 26 H 0.123 0.877 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.414 -1.495 12.014 13.262 hybrid contribution 0.208 0.173 -1.546 1.569 sum 5.622 -1.322 10.468 11.955 Atomic orbital electron populations 1.21747 0.98087 0.99050 0.99846 1.17216 0.92220 0.94544 0.87334 0.95273 1.21163 1.30566 1.12145 0.90056 0.92705 1.24952 0.95241 0.95048 0.98829 1.69891 1.37088 1.23053 1.23194 0.86627 0.79268 0.79425 0.82882 1.20712 1.21345 1.20049 1.20897 1.03095 0.94634 0.99456 1.23762 0.98967 0.96976 0.93256 1.77177 1.14379 1.05840 1.15987 1.47655 1.40879 1.08684 1.17690 1.21432 0.87767 1.04504 0.87116 1.23362 1.01648 0.91734 1.04404 1.23436 0.95601 0.98879 1.04166 1.22169 1.03179 0.95414 0.91587 0.89901 0.95493 0.97537 0.93110 0.80539 0.85307 0.87668 0.87186 0.87695 0.88088 0.82185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.86 37.16 0.33 -2.84 16 2 C 0.11 2.70 2.66 -92.92 -0.25 2.45 16 3 H 0.03 0.78 8.11 -51.93 -0.42 0.36 16 4 C -0.50 -13.81 8.42 -34.44 -0.29 -14.10 16 5 H 0.05 1.53 7.73 -52.49 -0.41 1.12 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C -0.17 -3.82 4.74 -105.06 -0.50 -4.32 16 13 C 0.06 1.21 11.52 -17.37 -0.20 1.01 16 14 N -0.31 -6.45 12.58 30.62 0.39 -6.07 16 15 N -0.37 -6.69 3.94 -54.86 -0.22 -6.91 16 16 C 0.10 1.29 7.14 -67.92 -0.48 0.81 16 17 C -0.17 -1.80 9.99 -26.72 -0.27 -2.07 16 18 C -0.18 -2.07 10.46 -26.72 -0.28 -2.34 16 19 C 0.02 0.36 10.71 -17.22 -0.18 0.18 16 20 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 21 H 0.03 0.62 8.02 -51.93 -0.42 0.21 16 22 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.18 3.54 8.06 -52.49 -0.42 3.12 16 25 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 26 H 0.10 1.17 7.01 -51.93 -0.36 0.80 16 27 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.16 2.71 7.24 -52.49 -0.38 2.33 16 LS Contribution 259.74 15.07 3.91 3.91 Total: -1.00 -30.48 259.74 -6.50 -36.98 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -3.97 Total: 0.19 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -2.22 Total: -19.68 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.80 Total: -37.83 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.48 -6.50 -36.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794514.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.106 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds