Wall clock time and date at job start Thu Apr 9 2020 14:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46956 * 2 1 4 4 C 1.50703 * 109.46927 * 240.00273 * 2 1 3 5 5 H 1.08001 * 119.99994 * 240.00231 * 4 2 1 6 6 C 1.37876 * 120.00342 * 60.00106 * 4 2 1 7 7 N 1.31514 * 119.99527 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00201 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47504 * 89.99582 * 8 6 4 10 10 H 1.48506 * 109.47023 * 210.00275 * 8 6 4 11 11 H 1.48503 * 109.46937 * 329.99589 * 8 6 4 12 12 C 1.50696 * 109.46905 * 120.00359 * 2 1 3 13 13 C 1.39867 * 126.04245 * 59.99737 * 12 2 1 14 14 N 1.30834 * 108.20347 * 179.97438 * 13 12 2 15 15 N 1.40082 * 108.20758 * 0.02562 * 14 13 12 16 16 C 1.46500 * 126.04008 * 180.02562 * 15 14 13 17 17 C 1.53006 * 117.49889 * 163.59899 * 16 15 14 18 18 C 1.53005 * 117.49664 * 94.97537 * 16 15 14 19 19 C 1.34954 * 107.92310 * 0.02562 * 15 14 13 20 20 H 1.09002 * 109.46643 * 59.99609 * 1 2 3 21 21 H 1.08997 * 109.47169 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46782 * 300.00420 * 1 2 3 23 23 H 0.97004 * 119.99693 * 179.97438 * 7 6 4 24 24 H 1.08000 * 125.89932 * 0.02562 * 13 12 2 25 25 H 1.09002 * 115.54878 * 309.30692 * 16 15 14 26 26 H 1.09003 * 117.49632 * 359.97438 * 17 16 15 27 27 H 1.08999 * 117.49776 * 145.02306 * 17 16 15 28 28 H 1.08997 * 117.49543 * 214.97458 * 18 16 15 29 29 H 1.08993 * 117.49979 * 359.97438 * 18 16 15 30 30 H 1.08001 * 126.12517 * 179.73977 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7123 12 6 2.0323 -0.7105 1.2304 13 6 1.7734 -2.0409 1.5758 14 7 2.3780 -2.2942 2.7081 15 7 3.0412 -1.1311 3.1200 16 6 3.8414 -0.9806 4.3379 17 6 4.7850 0.2211 4.4192 18 6 5.3531 -1.1856 4.2197 19 6 2.8127 -0.1737 2.1968 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.7088 1.1614 -3.4844 24 1 1.1781 -2.7388 1.0058 25 1 3.3599 -1.3062 5.2600 26 1 4.8106 0.8994 3.5664 27 1 4.9243 0.6864 5.3950 28 1 5.8661 -1.6455 5.0643 29 1 5.7520 -1.4327 3.2360 30 1 3.1836 0.8402 2.2258 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260794514.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:23 Heat of formation + Delta-G solvation = 81.485696 kcal Electronic energy + Delta-G solvation = -13017.071088 eV Core-core repulsion = 10814.226083 eV Total energy + Delta-G solvation = -2202.845005 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.04160 -38.11022 -36.13666 -33.07476 -31.65381 -29.49812 -27.12220 -24.38541 -23.62214 -23.05371 -20.99917 -20.66795 -18.35129 -17.69469 -16.65919 -16.45063 -15.46119 -15.01608 -14.70994 -14.56144 -13.93443 -13.51939 -13.27067 -12.83170 -12.75635 -12.47545 -12.30996 -12.18789 -11.99056 -11.74270 -11.44218 -11.22277 -10.89515 -10.39105 -10.11712 -8.99091 -8.02823 -6.15712 1.02363 1.43631 1.44641 1.54394 1.64482 2.08364 2.49618 2.66964 3.23862 3.59398 3.76469 3.97449 4.05578 4.20144 4.66847 4.76423 4.82242 4.85612 4.94367 5.06162 5.12157 5.13717 5.32561 5.39835 5.66368 5.86202 6.01112 6.17376 6.31064 6.47664 6.89550 6.93213 7.51712 9.01107 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.045175 B = 0.008014 C = 0.007706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.658526 B = 3492.968683 C = 3632.854574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.110 3.890 3 H 0.005 0.995 4 C -0.516 4.516 5 H 0.045 0.955 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.950 3.050 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.274 1.274 12 C -0.207 4.207 13 C 0.043 3.957 14 N -0.326 5.326 15 N -0.354 5.354 16 C 0.055 3.945 17 C -0.149 4.149 18 C -0.175 4.175 19 C 0.032 3.968 20 H 0.058 0.942 21 H 0.027 0.973 22 H 0.021 0.979 23 H 0.261 0.739 24 H 0.179 0.821 25 H 0.148 0.852 26 H 0.098 0.902 27 H 0.147 0.853 28 H 0.135 0.865 29 H 0.079 0.921 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.469 -0.752 12.494 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.091 3.909 3 H 0.023 0.977 4 C -0.554 4.554 5 H 0.063 0.937 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.776 3.224 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.199 1.199 12 C -0.218 4.218 13 C -0.142 4.142 14 N -0.148 5.148 15 N -0.137 5.137 16 C -0.046 4.046 17 C -0.187 4.187 18 C -0.213 4.213 19 C -0.113 4.113 20 H 0.077 0.923 21 H 0.047 0.953 22 H 0.040 0.960 23 H 0.070 0.930 24 H 0.196 0.804 25 H 0.165 0.835 26 H 0.117 0.883 27 H 0.165 0.835 28 H 0.154 0.846 29 H 0.097 0.903 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.702 -1.508 13.376 15.037 hybrid contribution -0.117 0.204 -1.845 1.860 sum 6.584 -1.305 11.531 13.342 Atomic orbital electron populations 1.21589 0.97869 0.98905 0.99299 1.17014 0.92435 0.93234 0.88248 0.97675 1.21409 1.30563 1.12022 0.91423 0.93684 1.25660 0.95433 0.95737 1.01526 1.70007 1.37840 1.24092 1.23840 0.85676 0.78715 0.78455 0.79508 1.20092 1.20783 1.19911 1.20677 1.05824 0.95439 0.99855 1.23777 0.99735 0.96812 0.93835 1.77107 1.14830 1.07155 1.15688 1.48020 1.39843 1.07416 1.18402 1.22059 0.88608 1.08237 0.85744 1.23540 0.98208 0.90836 1.06086 1.23496 0.93515 0.99999 1.04275 1.22443 1.01496 0.96430 0.90885 0.92339 0.95341 0.95982 0.93005 0.80403 0.83495 0.88324 0.83546 0.84647 0.90257 0.79745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.86 71.98 0.64 -5.28 16 2 C 0.11 5.69 2.66 -12.28 -0.03 5.66 16 3 H 0.01 0.28 8.11 -2.39 -0.02 0.26 16 4 C -0.52 -28.92 8.42 25.60 0.22 -28.70 16 5 H 0.04 2.55 7.73 -2.91 -0.02 2.53 16 6 C 0.01 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 8 Si 0.95 44.22 29.54 68.60 2.03 46.24 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 12 C -0.21 -9.33 4.74 -20.15 -0.10 -9.43 16 13 C 0.04 1.86 11.52 85.24 0.98 2.84 16 14 N -0.33 -13.24 12.58 -57.03 -0.72 -13.96 16 15 N -0.35 -12.43 3.94 -327.47 -1.29 -13.72 16 16 C 0.06 1.34 7.14 45.00 0.32 1.66 16 17 C -0.15 -2.53 9.99 30.60 0.31 -2.22 16 18 C -0.17 -3.41 10.46 30.60 0.32 -3.09 16 19 C 0.03 1.22 10.71 83.54 0.89 2.11 16 20 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 21 H 0.03 1.35 8.02 -2.39 -0.02 1.33 16 22 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 24 H 0.18 7.32 8.06 -2.91 -0.02 7.30 16 25 H 0.15 3.00 8.14 -2.39 -0.02 2.98 16 26 H 0.10 1.86 7.01 -2.39 -0.02 1.84 16 27 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.19 5.94 7.24 -2.91 -0.02 5.92 16 Total: -1.00 -65.59 259.74 5.38 -60.22 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.12 Total: 9.23 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 4.00 Total: -35.18 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.76 Total: -80.51 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -65.59 5.38 -60.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794514.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.705 kcal (2) G-P(sol) polarization free energy of solvation -65.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds