Wall clock time and date at job start Thu Apr 9 2020 14:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47515 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46678 * 119.99923 * 8 6 4 11 11 H 1.48493 * 109.47346 * 239.99833 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 C 1.39879 * 126.04148 * 300.02179 * 12 2 1 14 14 N 1.30834 * 108.20257 * 179.97438 * 13 12 2 15 15 N 1.40088 * 108.20574 * 0.02562 * 14 13 12 16 16 C 1.46502 * 126.03622 * 179.97438 * 15 14 13 17 17 C 1.53000 * 117.49803 * 163.59392 * 16 15 14 18 18 C 1.52997 * 117.49869 * 94.97059 * 16 15 14 19 19 C 1.34946 * 107.92587 * 359.75110 * 15 14 13 20 20 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 23 23 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 24 24 H 1.07995 * 125.89215 * 359.96096 * 13 12 2 25 25 H 1.09002 * 115.54655 * 309.29721 * 16 15 14 26 26 H 1.09000 * 117.50213 * 359.97438 * 17 16 15 27 27 H 1.09004 * 117.49769 * 145.01754 * 17 16 15 28 28 H 1.09008 * 117.49447 * 214.98043 * 18 16 15 29 29 H 1.08996 * 117.50232 * 359.97438 * 18 16 15 30 30 H 1.07998 * 126.12564 * 180.24493 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1485 -2.2857 3.6037 10 1 3.1474 -0.1858 4.8159 11 1 1.1680 -1.5867 4.8165 12 6 2.0323 -0.7104 -1.2305 13 6 1.7731 -2.0408 -1.5762 14 7 2.3768 -2.2938 -2.7090 15 7 3.0408 -1.1309 -3.1203 16 6 3.8405 -0.9801 -4.3385 17 6 4.1593 0.4424 -4.8028 18 6 3.1447 -0.4046 -5.5736 19 6 2.8096 -0.1725 -2.1988 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7091 1.1614 3.4844 24 1 1.1776 -2.7385 -1.0062 25 1 4.6006 -1.7447 -4.4994 26 1 3.7737 1.2662 -4.2022 27 1 5.1294 0.6141 -5.2693 28 1 3.4474 -0.7903 -6.5473 29 1 2.0919 -0.1385 -5.4800 30 1 3.1803 0.8414 -2.2278 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260794516.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:24 Heat of formation + Delta-G solvation = 99.155405 kcal Electronic energy + Delta-G solvation = -13005.375310 eV Core-core repulsion = 10803.296521 eV Total energy + Delta-G solvation = -2202.078789 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.52542 -37.04943 -34.19289 -31.12890 -30.15657 -27.80705 -25.01635 -23.02314 -22.64120 -21.38967 -19.62506 -19.01116 -16.79491 -15.79894 -15.54120 -14.55629 -14.04298 -13.50380 -13.06234 -12.74288 -12.56536 -11.97710 -11.60547 -11.30715 -11.02863 -10.88285 -10.78797 -10.59385 -10.25576 -10.24689 -9.87540 -9.37096 -8.87542 -8.63906 -8.28440 -7.35651 -5.92415 -3.97653 2.54395 2.93523 3.33847 3.41855 3.46711 3.61975 3.77480 4.51065 4.55642 4.68798 4.87535 5.36175 5.39296 5.43651 5.66889 5.69880 5.90421 5.95874 6.45722 6.61543 6.83762 7.00656 7.17918 7.36766 7.53794 7.74739 7.82865 8.02553 8.20829 8.45158 8.56529 9.05760 9.66624 11.13266 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.053648 B = 0.007637 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.791217 B = 3665.429086 C = 3741.998277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.106 3.894 3 H 0.029 0.971 4 C -0.500 4.500 5 H 0.056 0.944 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.889 3.111 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.170 4.170 13 C 0.056 3.944 14 N -0.313 5.313 15 N -0.365 5.365 16 C 0.096 3.904 17 C -0.173 4.173 18 C -0.183 4.183 19 C 0.018 3.982 20 H 0.083 0.917 21 H 0.005 0.995 22 H 0.026 0.974 23 H 0.258 0.742 24 H 0.178 0.822 25 H 0.130 0.870 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.106 -0.395 -11.833 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.086 3.914 3 H 0.047 0.953 4 C -0.538 4.538 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.718 3.282 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.181 4.181 13 C -0.129 4.129 14 N -0.134 5.134 15 N -0.149 5.149 16 C -0.008 4.008 17 C -0.211 4.211 18 C -0.221 4.221 19 C -0.124 4.124 20 H 0.101 0.899 21 H 0.024 0.976 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.195 0.805 25 H 0.147 0.853 26 H 0.123 0.877 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.346 -1.146 -12.683 13.456 hybrid contribution 0.195 0.199 1.541 1.566 sum 4.541 -0.946 -11.142 12.069 Atomic orbital electron populations 1.21746 0.98099 0.99044 0.99825 1.17221 0.92196 0.94557 0.87378 0.95273 1.21205 1.30460 1.12151 0.90030 0.92612 1.24957 0.95233 0.95057 0.98851 1.69894 1.37173 1.23092 1.23093 0.86571 0.78630 0.79754 0.83276 1.19839 1.21172 1.21080 1.20901 1.03131 0.94594 0.99450 1.23766 0.99013 0.96992 0.93178 1.77180 1.14252 1.06017 1.15922 1.47652 1.40893 1.08796 1.17566 1.21431 0.96910 0.98358 0.84055 1.23358 1.01279 0.93408 1.03089 1.23431 0.99125 1.03460 0.96084 1.22167 1.03074 0.95450 0.91664 0.89884 0.97589 0.95489 0.93167 0.80533 0.85288 0.87700 0.87165 0.87693 0.88187 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.86 37.16 0.33 -2.83 16 2 C 0.11 2.69 2.66 -92.92 -0.25 2.44 16 3 H 0.03 0.78 8.11 -51.93 -0.42 0.36 16 4 C -0.50 -13.80 8.42 -34.44 -0.29 -14.09 16 5 H 0.06 1.56 7.73 -52.49 -0.41 1.15 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 8 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C -0.17 -3.82 4.74 -105.05 -0.50 -4.32 16 13 C 0.06 1.21 11.52 -17.36 -0.20 1.01 16 14 N -0.31 -6.45 12.58 30.62 0.39 -6.06 16 15 N -0.37 -6.69 3.94 -54.86 -0.22 -6.91 16 16 C 0.10 1.30 7.14 -67.93 -0.48 0.81 16 17 C -0.17 -1.78 9.98 -26.73 -0.27 -2.05 16 18 C -0.18 -1.99 10.46 -26.73 -0.28 -2.27 16 19 C 0.02 0.36 10.71 -17.22 -0.18 0.18 16 20 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 21 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 22 H 0.03 0.62 8.02 -51.93 -0.42 0.21 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.18 3.54 8.06 -52.49 -0.42 3.12 16 25 H 0.13 1.56 8.14 -51.93 -0.42 1.13 16 26 H 0.10 1.13 7.00 -51.93 -0.36 0.77 16 27 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.16 2.71 7.23 -52.49 -0.38 2.33 16 LS Contribution 259.72 15.07 3.91 3.91 Total: -1.00 -30.52 259.72 -6.50 -37.02 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -3.97 Total: 0.03 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -2.22 Total: -19.56 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.80 Total: -37.84 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.52 -6.50 -37.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794516.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.180 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds