Wall clock time and date at job start Thu Apr 9 2020 14:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47515 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46678 * 119.99923 * 8 6 4 11 11 H 1.48493 * 109.47346 * 239.99833 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 C 1.39879 * 126.04148 * 300.02179 * 12 2 1 14 14 N 1.30834 * 108.20257 * 179.97438 * 13 12 2 15 15 N 1.40088 * 108.20574 * 0.02562 * 14 13 12 16 16 C 1.46502 * 126.03622 * 179.97438 * 15 14 13 17 17 C 1.53000 * 117.49803 * 163.59392 * 16 15 14 18 18 C 1.52997 * 117.49869 * 94.97059 * 16 15 14 19 19 C 1.34946 * 107.92587 * 359.75110 * 15 14 13 20 20 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 23 23 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 24 24 H 1.07995 * 125.89215 * 359.96096 * 13 12 2 25 25 H 1.09002 * 115.54655 * 309.29721 * 16 15 14 26 26 H 1.09000 * 117.50213 * 359.97438 * 17 16 15 27 27 H 1.09004 * 117.49769 * 145.01754 * 17 16 15 28 28 H 1.09008 * 117.49447 * 214.98043 * 18 16 15 29 29 H 1.08996 * 117.50232 * 359.97438 * 18 16 15 30 30 H 1.07998 * 126.12564 * 180.24493 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1485 -2.2857 3.6037 10 1 3.1474 -0.1858 4.8159 11 1 1.1680 -1.5867 4.8165 12 6 2.0323 -0.7104 -1.2305 13 6 1.7731 -2.0408 -1.5762 14 7 2.3768 -2.2938 -2.7090 15 7 3.0408 -1.1309 -3.1203 16 6 3.8405 -0.9801 -4.3385 17 6 4.1593 0.4424 -4.8028 18 6 3.1447 -0.4046 -5.5736 19 6 2.8096 -0.1725 -2.1988 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7091 1.1614 3.4844 24 1 1.1776 -2.7385 -1.0062 25 1 4.6006 -1.7447 -4.4994 26 1 3.7737 1.2662 -4.2022 27 1 5.1294 0.6141 -5.2693 28 1 3.4474 -0.7903 -6.5473 29 1 2.0919 -0.1385 -5.4800 30 1 3.1803 0.8414 -2.2278 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260794516.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:24 Heat of formation + Delta-G solvation = 81.478123 kcal Electronic energy + Delta-G solvation = -13006.141854 eV Core-core repulsion = 10803.296521 eV Total energy + Delta-G solvation = -2202.845334 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.04142 -38.10926 -36.13635 -33.07505 -31.65182 -29.49679 -27.12418 -24.38742 -23.61284 -23.05566 -20.99209 -20.66163 -18.39780 -17.66846 -16.61459 -16.46642 -15.49757 -14.96287 -14.73302 -14.52229 -14.03874 -13.45007 -13.26770 -12.86200 -12.77274 -12.46579 -12.24420 -12.19916 -11.95981 -11.77449 -11.45791 -11.22468 -10.87980 -10.39122 -10.11653 -8.98921 -8.02824 -6.15513 1.02583 1.42751 1.45106 1.56252 1.64583 2.08359 2.49797 2.67654 3.24023 3.59025 3.77032 3.97914 4.05979 4.20244 4.67210 4.76688 4.82136 4.85603 4.94609 5.05819 5.12520 5.13420 5.32329 5.39632 5.66782 5.86127 6.01106 6.17231 6.31156 6.47906 6.89647 6.93627 7.51981 9.01388 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.053648 B = 0.007637 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.791217 B = 3665.429086 C = 3741.998277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.110 3.890 3 H 0.005 0.995 4 C -0.515 4.515 5 H 0.045 0.955 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.279 1.279 12 C -0.207 4.207 13 C 0.043 3.957 14 N -0.326 5.326 15 N -0.353 5.353 16 C 0.052 3.948 17 C -0.150 4.150 18 C -0.170 4.170 19 C 0.032 3.968 20 H 0.058 0.942 21 H 0.021 0.979 22 H 0.027 0.973 23 H 0.261 0.739 24 H 0.179 0.821 25 H 0.144 0.856 26 H 0.100 0.900 27 H 0.144 0.856 28 H 0.135 0.865 29 H 0.083 0.917 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.348 -0.345 -13.173 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.090 3.910 3 H 0.023 0.977 4 C -0.553 4.553 5 H 0.064 0.936 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.205 1.205 12 C -0.218 4.218 13 C -0.142 4.142 14 N -0.148 5.148 15 N -0.136 5.136 16 C -0.050 4.050 17 C -0.188 4.188 18 C -0.208 4.208 19 C -0.113 4.113 20 H 0.077 0.923 21 H 0.040 0.960 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.196 0.804 25 H 0.161 0.839 26 H 0.118 0.882 27 H 0.162 0.838 28 H 0.153 0.847 29 H 0.102 0.898 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.593 -1.110 -14.051 15.164 hybrid contribution -0.141 0.223 1.826 1.845 sum 5.451 -0.886 -12.225 13.415 Atomic orbital electron populations 1.21588 0.97884 0.98903 0.99276 1.17018 0.92410 0.93246 0.88283 0.97671 1.21442 1.30461 1.12010 0.91403 0.93642 1.25666 0.95428 0.95748 1.01548 1.70008 1.37916 1.24125 1.23784 0.85614 0.78178 0.78654 0.79844 1.19736 1.20639 1.20479 1.20679 1.05904 0.95383 0.99830 1.23779 0.99786 0.96829 0.93776 1.77110 1.14666 1.07392 1.15625 1.48014 1.39707 1.07551 1.18369 1.22045 0.98088 1.01400 0.83417 1.23540 1.02631 0.91070 1.01562 1.23498 0.98495 1.02594 0.96199 1.22440 1.01429 0.96484 0.90900 0.92319 0.96039 0.95335 0.93012 0.80416 0.83873 0.88162 0.83786 0.84716 0.89806 0.79737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 8.86 71.98 0.64 -5.27 16 2 C 0.11 5.68 2.66 -12.29 -0.03 5.65 16 3 H 0.01 0.29 8.11 -2.39 -0.02 0.27 16 4 C -0.51 -28.88 8.42 25.60 0.22 -28.66 16 5 H 0.05 2.58 7.73 -2.91 -0.02 2.56 16 6 C 0.01 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -53.08 11.32 21.45 0.24 -52.84 16 8 Si 0.95 44.25 29.54 68.60 2.03 46.27 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 C -0.21 -9.33 4.74 -20.14 -0.10 -9.43 16 13 C 0.04 1.85 11.52 85.24 0.98 2.84 16 14 N -0.33 -13.26 12.58 -57.02 -0.72 -13.98 16 15 N -0.35 -12.43 3.94 -327.49 -1.29 -13.72 16 16 C 0.05 1.27 7.14 44.99 0.32 1.59 16 17 C -0.15 -2.51 9.98 30.59 0.31 -2.20 16 18 C -0.17 -3.14 10.46 30.59 0.32 -2.82 16 19 C 0.03 1.22 10.71 83.54 0.89 2.11 16 20 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 21 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.03 1.35 8.02 -2.39 -0.02 1.33 16 23 H 0.26 14.28 8.31 -92.71 -0.77 13.50 16 24 H 0.18 7.32 8.06 -2.91 -0.02 7.30 16 25 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.10 1.82 7.00 -2.39 -0.02 1.80 16 27 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.19 5.94 7.23 -2.91 -0.02 5.92 16 Total: -1.00 -65.63 259.72 5.38 -60.25 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.12 Total: 8.96 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 4.00 Total: -34.95 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -1.76 Total: -80.54 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -65.63 5.38 -60.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794516.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.733 kcal (2) G-P(sol) polarization free energy of solvation -65.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds