Wall clock time and date at job start Thu Apr 9 2020 14:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.72745 * 2 1 4 4 C 1.53292 * 109.60106 * 120.39817 * 2 1 3 5 5 C 1.53116 * 109.63895 * 170.36138 * 4 2 1 6 6 C 1.53502 * 109.29856 * 290.17203 * 5 4 2 7 7 C 1.50764 * 108.04391 * 48.82149 * 6 5 4 8 8 C 1.35499 * 128.46832 * 164.07922 * 7 6 5 9 9 N 1.33055 * 108.42344 * 180.12352 * 8 7 6 10 10 C 1.33255 * 109.29013 * 359.97438 * 9 8 7 11 11 C 1.39993 * 126.04981 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00510 * 209.62919 * 11 10 9 13 13 C 1.40241 * 119.99461 * 29.62214 * 11 10 9 14 14 N 1.30692 * 119.99779 * 188.71456 * 13 11 10 15 15 Si 1.86794 * 120.00283 * 8.71391 * 13 11 10 16 16 H 1.48497 * 109.47037 * 84.39659 * 15 13 11 17 17 H 1.48496 * 109.47266 * 204.39819 * 15 13 11 18 18 H 1.48501 * 109.47091 * 324.39716 * 15 13 11 19 19 N 1.36712 * 124.14986 * 344.14081 * 7 6 5 20 20 H 1.09004 * 109.46910 * 292.96812 * 1 2 3 21 21 H 1.08995 * 109.47286 * 52.97452 * 1 2 3 22 22 H 1.08996 * 109.47075 * 172.97297 * 1 2 3 23 23 H 1.09009 * 109.43446 * 290.39906 * 4 2 1 24 24 H 1.08996 * 109.43971 * 50.31789 * 4 2 1 25 25 H 1.09001 * 109.50004 * 50.16997 * 5 4 2 26 26 H 1.09005 * 109.49941 * 170.27061 * 5 4 2 27 27 H 1.09002 * 109.79399 * 289.16116 * 6 5 4 28 28 H 1.09004 * 109.76111 * 168.45519 * 6 5 4 29 29 H 1.08001 * 125.78773 * 0.14068 * 8 7 6 30 30 H 0.97005 * 120.00248 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8979 1.0260 0.0000 4 6 2.0443 -0.7307 1.2456 5 6 3.5562 -0.9429 1.1302 6 6 3.8408 -1.9802 0.0349 7 6 3.0560 -1.5910 -1.1921 8 6 3.2138 -2.0243 -2.4662 9 7 2.3084 -1.4198 -3.2311 10 6 1.5690 -0.6059 -2.4784 11 6 0.5153 0.1998 -2.9262 12 1 0.2939 1.1288 -2.4220 13 6 -0.2526 -0.1995 -4.0297 14 7 -1.1213 0.6244 -4.5537 15 14 -0.0338 -1.9088 -4.7505 16 1 -0.8618 -2.8773 -3.9879 17 1 -0.4608 -1.9046 -6.1727 18 1 1.3952 -2.3033 -4.6638 19 7 2.0210 -0.6977 -1.1897 20 1 -0.3633 0.4010 0.9462 21 1 -0.3633 0.6188 -0.8204 22 1 -0.3633 -1.0199 -0.1257 23 1 1.8284 -0.1334 2.1315 24 1 1.5477 -1.6973 1.3300 25 1 4.0375 0.0006 0.8726 26 1 3.9468 -1.3033 2.0819 27 1 3.5296 -2.9687 0.3729 28 1 4.9059 -1.9888 -0.1967 29 1 3.9495 -2.7394 -2.8035 30 1 -1.6528 0.3481 -5.3167 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261161318.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:47 Heat of formation + Delta-G solvation = 24.803054 kcal Electronic energy + Delta-G solvation = -13793.704881 eV Core-core repulsion = 11588.401932 eV Total energy + Delta-G solvation = -2205.302949 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.45760 -37.62837 -35.44218 -34.15067 -31.47923 -30.38547 -28.52122 -25.71334 -23.58513 -22.56972 -21.77115 -19.62810 -18.90800 -17.65860 -16.22106 -15.96455 -15.39899 -14.98328 -14.78517 -14.74033 -14.38232 -13.81845 -13.55068 -13.22324 -12.92556 -12.85835 -12.72024 -12.14748 -12.07032 -11.83404 -11.66424 -11.38624 -11.15825 -10.05130 -9.38348 -8.92979 -8.69630 -6.40258 1.24932 1.42422 1.61867 1.83717 2.41907 2.46989 2.62013 3.29521 3.74285 3.84361 3.97046 4.25044 4.28475 4.43717 4.54432 4.66624 4.76563 4.89156 4.93371 5.03339 5.05448 5.09314 5.24803 5.26449 5.38283 5.46750 5.74096 6.13889 6.26608 6.55810 6.84031 7.21060 7.88555 8.35033 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.041491 B = 0.013557 C = 0.011019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.677772 B = 2064.928541 C = 2540.432062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.136 3.864 3 H 0.068 0.932 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.029 4.029 7 C -0.097 4.097 8 C -0.052 4.052 9 N -0.591 5.591 10 C 0.335 3.665 11 C -0.471 4.471 12 H 0.069 0.931 13 C 0.072 3.928 14 N -0.866 5.866 15 Si 0.907 3.093 16 H -0.292 1.292 17 H -0.292 1.292 18 H -0.164 1.164 19 N -0.482 5.482 20 H 0.095 0.905 21 H 0.054 0.946 22 H 0.040 0.960 23 H 0.107 0.893 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.164 0.836 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 -4.094 12.412 14.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.086 0.914 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.067 4.067 7 C -0.211 4.211 8 C -0.201 4.201 9 N -0.315 5.315 10 C 0.088 3.912 11 C -0.510 4.510 12 H 0.087 0.913 13 C -0.142 4.142 14 N -0.497 5.497 15 Si 0.731 3.269 16 H -0.219 1.219 17 H -0.220 1.220 18 H -0.085 1.085 19 N -0.169 5.169 20 H 0.114 0.886 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.126 0.874 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.121 0.879 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.181 0.819 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.117 -4.059 11.599 13.727 hybrid contribution -0.482 -0.084 -0.107 0.501 sum 5.635 -4.143 11.492 13.453 Atomic orbital electron populations 1.22081 0.93780 1.02018 1.03259 1.21445 0.95416 0.95654 0.84186 0.91408 1.21915 0.96837 1.01087 0.95634 1.21628 0.95063 0.99050 0.99635 1.20128 0.98339 0.98987 0.89259 1.21529 0.99175 1.01820 0.98562 1.22097 1.01942 1.05313 0.90722 1.71272 1.11007 1.17499 1.31771 1.20035 0.95694 0.95920 0.79597 1.17788 1.12864 1.05993 1.14343 0.91288 1.26245 0.92056 1.01656 0.94283 1.69575 1.21128 1.37668 1.21281 0.86472 0.85128 0.79444 0.75835 1.21904 1.21954 1.08524 1.45869 1.28554 1.34894 1.07593 0.88648 0.92719 0.94062 0.87433 0.91508 0.92556 0.87940 0.90275 0.89484 0.81893 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 8.67 71.98 0.62 -4.91 16 2 C 0.14 4.81 3.56 45.11 0.16 4.97 16 3 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 4 C -0.12 -2.94 5.23 30.73 0.16 -2.78 16 5 C -0.12 -2.66 5.95 30.80 0.18 -2.47 16 6 C -0.03 -0.80 6.32 30.04 0.19 -0.61 16 7 C -0.10 -3.94 6.61 41.18 0.27 -3.67 16 8 C -0.05 -2.37 11.82 83.87 0.99 -1.38 16 9 N -0.59 -31.60 6.93 -194.83 -1.35 -32.95 16 10 C 0.34 18.05 6.49 133.73 0.87 18.91 16 11 C -0.47 -27.22 8.07 23.18 0.19 -27.03 16 12 H 0.07 4.15 6.69 -2.91 -0.02 4.13 16 13 C 0.07 4.18 5.52 85.35 0.47 4.65 16 14 N -0.87 -50.68 13.92 21.88 0.30 -50.38 16 15 Si 0.91 46.33 27.27 68.60 1.87 48.20 16 16 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 17 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 18 H -0.16 -8.51 4.93 99.48 0.49 -8.02 16 19 N -0.48 -21.58 3.03 -484.47 -1.47 -23.05 16 20 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 21 H 0.05 2.38 5.38 -2.39 -0.01 2.36 16 22 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.11 1.98 8.14 -2.38 -0.02 1.97 16 24 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 25 H 0.06 1.37 8.12 -2.39 -0.02 1.35 16 26 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.16 6.29 8.06 -2.91 -0.02 6.27 16 30 H 0.29 15.49 8.29 -92.70 -0.77 14.72 16 Total: -1.00 -68.19 240.16 4.37 -63.82 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.90 Total: 8.66 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 4.11 Total: -14.31 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -2.51 Total: -106.37 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.87 Total: 48.20 kcal Total: -68.19 4.37 -63.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161318.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.619 kcal (2) G-P(sol) polarization free energy of solvation -68.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds