Wall clock time and date at job start Thu Apr 9 2020 14:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34007 * 125.98670 * 2 1 4 4 C 1.30906 * 109.30442 * 179.86373 * 3 2 1 5 5 N 1.35014 * 108.57446 * 0.18095 * 4 3 2 6 6 C 1.34567 * 125.98531 * 179.97438 * 2 1 3 7 7 C 1.50707 * 126.58049 * 0.02562 * 6 2 1 8 8 C 1.47016 * 111.06443 * 179.70786 * 5 4 3 9 9 C 1.54385 * 105.60538 * 17.11353 * 8 5 4 10 10 C 1.51565 * 141.44859 * 180.15068 * 4 3 2 11 11 H 1.08994 * 110.47810 * 44.78487 * 10 4 3 12 12 C 1.50704 * 110.58928 * 282.22113 * 10 4 3 13 13 H 1.07999 * 119.99831 * 245.11224 * 12 10 4 14 14 C 1.37871 * 119.99967 * 65.11111 * 12 10 4 15 15 N 1.31515 * 120.00112 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99848 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47112 * 60.00290 * 16 14 12 18 18 H 1.48506 * 109.46865 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47066 * 299.99896 * 16 14 12 20 20 H 1.09006 * 109.47178 * 90.02295 * 1 2 3 21 21 H 1.09000 * 109.47595 * 210.02300 * 1 2 3 22 22 H 1.08998 * 109.47494 * 330.02412 * 1 2 3 23 23 H 1.08997 * 109.46799 * 89.97627 * 7 6 2 24 24 H 1.08997 * 109.46735 * 209.97909 * 7 6 2 25 25 H 1.08999 * 109.46933 * 329.97844 * 7 6 2 26 26 H 1.09002 * 110.23499 * 258.05556 * 8 5 4 27 27 H 1.09004 * 110.23408 * 136.17125 * 8 5 4 28 28 H 1.09006 * 110.96814 * 92.37427 * 9 8 5 29 29 H 1.08996 * 110.96916 * 216.09308 * 9 8 5 30 30 H 0.97000 * 119.99957 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2944 1.0843 0.0000 4 6 3.5483 0.7085 0.0029 5 7 3.5929 -0.6409 0.0009 6 6 2.2976 -1.0889 0.0005 7 6 1.8461 -2.5267 0.0006 8 6 4.9815 -1.1237 -0.0030 9 6 5.8415 0.0816 0.4344 10 6 4.9549 1.2731 0.0073 11 1 5.0369 2.0869 0.7278 12 6 5.3392 1.7492 -1.3699 13 1 6.1388 1.2604 -1.9067 14 6 4.6700 2.8088 -1.9446 15 7 3.6960 3.4038 -1.2912 16 14 5.1459 3.3985 -3.6521 17 1 4.9680 2.2913 -4.6256 18 1 4.2818 4.5425 -4.0394 19 1 6.5665 3.8309 -3.6484 20 1 -0.3634 -0.0004 -1.0277 21 1 -0.3634 -0.8897 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 1.7372 -2.8734 -1.0270 24 1 2.5863 -3.1399 0.5145 25 1 0.8881 -2.6066 0.5144 26 1 5.2658 -1.4459 -1.0047 27 1 5.0969 -1.9454 0.7038 28 1 5.9975 0.0785 1.5132 29 1 6.7940 0.0938 -0.0953 30 1 3.2250 4.1490 -1.6957 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261166300.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:49 Heat of formation + Delta-G solvation = 58.789261 kcal Electronic energy + Delta-G solvation = -13603.340315 eV Core-core repulsion = 11399.511118 eV Total energy + Delta-G solvation = -2203.829196 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.26489 -35.82888 -32.76526 -31.51644 -30.43660 -28.22345 -26.40312 -24.31797 -23.76240 -20.08423 -18.94152 -18.56129 -16.73098 -15.03876 -14.81420 -14.43116 -13.59687 -13.47641 -12.82839 -12.49684 -12.33798 -12.03366 -11.89462 -11.75433 -11.37221 -11.33016 -11.03658 -10.82963 -10.58288 -10.50190 -9.54806 -9.32711 -8.46734 -8.37491 -8.26386 -6.87355 -5.92998 -4.08979 3.09278 3.33522 3.39138 3.39596 3.76561 4.37102 4.51475 5.08519 5.33307 5.49595 5.52705 5.64262 5.67498 5.76619 5.89721 6.02360 6.11987 6.23399 6.33698 6.37041 6.41627 6.54325 6.83910 6.97158 7.43578 7.58391 7.86659 8.03765 8.15641 8.38281 8.92714 9.54974 9.59597 11.09363 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.033417 B = 0.012676 C = 0.010516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.702602 B = 2208.361087 C = 2661.871461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.010 4.010 3 N -0.466 5.466 4 C 0.270 3.730 5 N -0.496 5.496 6 C -0.059 4.059 7 C -0.061 4.061 8 C 0.118 3.882 9 C -0.127 4.127 10 C 0.118 3.882 11 H 0.056 0.944 12 C -0.537 4.537 13 H 0.061 0.939 14 C 0.072 3.928 15 N -0.837 5.837 16 Si 0.890 3.110 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.276 1.276 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 -9.095 2.619 9.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.140 4.140 3 N -0.183 5.183 4 C 0.006 3.994 5 N -0.182 5.182 6 C -0.171 4.171 7 C -0.119 4.119 8 C -0.004 4.004 9 C -0.165 4.165 10 C 0.097 3.903 11 H 0.073 0.927 12 C -0.576 4.576 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.470 5.470 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.201 1.201 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.860 -8.365 2.628 8.810 hybrid contribution 0.394 -0.598 -1.183 1.383 sum -0.465 -8.963 1.445 9.091 Atomic orbital electron populations 1.19856 0.89076 1.01241 1.01022 1.20466 0.95695 0.88582 1.09273 1.69990 0.99432 1.28055 1.20810 1.25513 0.96185 0.80073 0.97583 1.46460 1.04546 1.10846 1.56309 1.20236 0.82656 0.96164 1.18063 1.19979 1.00525 0.90242 1.01162 1.22080 0.78943 0.97896 1.01466 1.22773 0.99120 0.94550 1.00046 1.17976 0.81441 0.91998 0.98841 0.92652 1.20749 1.19601 1.16498 1.00714 0.92088 1.25056 0.94605 0.96412 0.97511 1.70050 1.19420 1.20666 1.36839 0.86708 0.78388 0.78336 0.84837 1.20483 1.21174 1.20110 0.92510 0.92588 0.91847 0.92452 0.93125 0.91193 0.90709 0.91653 0.91925 0.89268 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.97 10.22 36.00 0.37 -0.61 16 2 C -0.01 -0.23 7.09 -82.94 -0.59 -0.81 16 3 N -0.47 -12.82 10.92 -6.77 -0.07 -12.89 16 4 C 0.27 7.10 7.15 -154.68 -1.11 6.00 16 5 N -0.50 -11.20 3.62 -107.71 -0.39 -11.59 16 6 C -0.06 -1.25 7.23 -81.55 -0.59 -1.84 16 7 C -0.06 -0.95 10.22 36.01 0.37 -0.58 16 8 C 0.12 2.17 7.77 -3.04 -0.02 2.15 16 9 C -0.13 -2.40 6.68 -25.20 -0.17 -2.57 16 10 C 0.12 2.97 2.80 -91.69 -0.26 2.71 16 11 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 12 C -0.54 -14.58 8.51 -34.44 -0.29 -14.87 16 13 H 0.06 1.58 7.59 -52.49 -0.40 1.18 16 14 C 0.07 2.04 5.35 -17.82 -0.10 1.94 16 15 N -0.84 -24.96 12.39 55.43 0.69 -24.28 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.06 0.82 7.17 -51.93 -0.37 0.45 16 22 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.93 7.17 -51.93 -0.37 0.56 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.09 1.55 7.75 -51.93 -0.40 1.14 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 253.94 15.07 3.83 3.83 Total: -1.00 -32.74 253.94 -7.42 -40.16 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -4.06 Total: -3.26 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -2.39 Total: -8.49 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.22 Total: -48.76 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.74 -7.42 -40.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166300.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.947 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds