Wall clock time and date at job start Thu Apr 9 2020 14:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.73576 * 2 1 4 4 C 1.53485 * 109.73940 * 239.28136 * 2 1 3 5 5 C 1.53124 * 109.30581 * 191.60766 * 4 2 1 6 6 C 1.53293 * 109.66992 * 69.76651 * 5 4 2 7 7 N 1.46398 * 108.70255 * 309.42893 * 6 5 4 8 8 C 1.36871 * 128.48339 * 197.21353 * 7 6 5 9 9 C 1.40002 * 126.04598 * 359.85849 * 8 7 6 10 10 H 1.08001 * 119.99608 * 0.02562 * 9 8 7 11 11 C 1.40234 * 120.00275 * 179.97438 * 9 8 7 12 12 N 1.30694 * 119.99977 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00366 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47339 * 180.02562 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00648 * 13 11 9 16 16 H 1.48504 * 109.46636 * 60.00207 * 13 11 9 17 17 N 1.33260 * 107.91167 * 180.12192 * 8 7 6 18 18 C 1.33050 * 109.28734 * 359.60210 * 17 8 7 19 19 C 1.35498 * 108.42207 * 0.45213 * 18 17 8 20 20 H 1.09001 * 109.46815 * 299.33814 * 1 2 3 21 21 H 1.09004 * 109.46801 * 59.33153 * 1 2 3 22 22 H 1.08996 * 109.47394 * 179.33718 * 1 2 3 23 23 H 1.09003 * 109.49700 * 311.55680 * 4 2 1 24 24 H 1.08999 * 109.49433 * 71.62127 * 4 2 1 25 25 H 1.09006 * 109.43362 * 189.82828 * 5 4 2 26 26 H 1.09000 * 109.43681 * 309.70737 * 5 4 2 27 27 H 1.08996 * 109.59722 * 189.65818 * 6 5 4 28 28 H 1.09004 * 109.59161 * 69.19359 * 6 5 4 29 29 H 0.96996 * 120.00343 * 179.97438 * 12 11 9 30 30 H 1.07997 * 125.78770 * 180.14411 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8981 1.0259 0.0000 4 6 2.0484 -0.7380 -1.2420 5 6 3.5518 -0.9871 -1.0920 6 6 3.7950 -2.0328 0.0022 7 7 3.0572 -1.6360 1.2029 8 6 3.2260 -2.0722 2.4892 9 6 4.1654 -3.0154 2.9227 10 1 4.8421 -3.4688 2.2136 11 6 4.2285 -3.3705 4.2779 12 7 3.4099 -2.8215 5.1361 13 14 5.4814 -4.6295 4.8562 14 1 5.3435 -4.8282 6.3213 15 1 5.2463 -5.9188 4.1580 16 1 6.8503 -4.1427 4.5489 17 7 2.3342 -1.4445 3.2551 18 6 1.6115 -0.6195 2.5021 19 6 2.0392 -0.7238 1.2206 20 1 -0.3633 0.5035 0.8959 21 1 -0.3633 0.5242 -0.8840 22 1 -0.3634 -1.0275 -0.0119 23 1 1.5297 -1.6915 -1.3415 24 1 1.8664 -0.1305 -2.1285 25 1 3.9552 -1.3506 -2.0372 26 1 4.0485 -0.0557 -0.8205 27 1 4.8600 -2.0849 0.2279 28 1 3.4430 -3.0066 -0.3382 29 1 3.4533 -3.0674 6.0734 30 1 0.8152 0.0208 2.8519 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261168917.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:59 Heat of formation + Delta-G solvation = 38.453467 kcal Electronic energy + Delta-G solvation = -13533.639125 eV Core-core repulsion = 11328.928102 eV Total energy + Delta-G solvation = -2204.711023 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.26616 -35.95842 -33.25186 -32.82966 -29.43532 -28.15707 -25.90522 -24.65737 -21.80136 -20.88140 -19.81636 -17.86983 -16.73900 -15.42104 -14.75800 -14.33380 -13.98541 -13.29449 -13.11010 -12.91251 -12.49870 -11.97100 -11.92561 -11.45877 -11.21922 -11.13684 -10.74502 -10.56673 -10.47623 -10.23218 -10.06078 -9.93509 -9.09942 -7.79613 -7.66923 -6.87302 -6.32406 -4.18375 3.10153 3.18663 3.20120 3.71156 4.06441 4.44894 4.76427 5.14040 5.16370 5.27870 5.63013 5.70717 5.82848 5.96293 5.99074 6.05237 6.15644 6.18370 6.25866 6.47546 6.50723 6.57612 6.65522 6.81493 7.24309 7.40645 7.70489 8.26363 8.30582 8.65411 9.04788 9.42542 10.32864 10.61031 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.050670 B = 0.010213 C = 0.008728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.457144 B = 2740.870921 C = 3207.138474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.003 3.997 3 H 0.060 0.940 4 C -0.113 4.113 5 C -0.127 4.127 6 C 0.127 3.873 7 N -0.502 5.502 8 C 0.378 3.622 9 C -0.464 4.464 10 H 0.075 0.925 11 C 0.082 3.918 12 N -0.744 5.744 13 Si 0.909 3.091 14 H -0.279 1.279 15 H -0.268 1.268 16 H -0.268 1.268 17 N -0.519 5.519 18 C -0.006 4.006 19 C -0.141 4.141 20 H 0.055 0.945 21 H 0.044 0.956 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.271 0.729 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.311 1.889 -9.233 9.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.016 4.016 3 H 0.078 0.922 4 C -0.151 4.151 5 C -0.165 4.165 6 C 0.002 3.998 7 N -0.192 5.192 8 C 0.135 3.865 9 C -0.504 4.504 10 H 0.093 0.907 11 C -0.141 4.141 12 N -0.369 5.369 13 Si 0.734 3.266 14 H -0.204 1.204 15 H -0.193 1.193 16 H -0.193 1.193 17 N -0.240 5.240 18 C -0.159 4.159 19 C -0.252 4.252 20 H 0.074 0.926 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.440 1.781 -8.274 8.475 hybrid contribution 0.691 -0.478 -0.627 1.048 sum 0.251 1.303 -8.901 8.999 Atomic orbital electron populations 1.21733 0.95265 1.01484 1.00630 1.19355 0.94492 0.96967 0.90824 0.92157 1.21654 0.95311 1.00553 0.97585 1.21798 0.97234 0.99547 0.97953 1.21312 0.96598 0.97000 0.84852 1.45224 1.29972 1.36555 1.07473 1.20075 0.95056 0.94802 0.76565 1.18034 1.16575 1.21951 0.93805 0.90729 1.25678 0.95839 0.96253 0.96323 1.70009 1.30069 1.33932 1.02911 0.86390 0.81156 0.81090 0.77982 1.20391 1.19324 1.19319 1.71493 1.10044 1.13464 1.28987 1.21669 1.02091 1.02443 0.89691 1.20296 1.02051 1.06483 0.96358 0.92551 0.93648 0.92945 0.92100 0.92367 0.91311 0.91642 0.91098 0.92489 0.91785 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.97 37.16 0.33 -1.74 16 2 C 0.00 0.06 3.11 -91.48 -0.28 -0.23 16 3 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.11 -1.75 5.28 -26.42 -0.14 -1.89 16 5 C -0.13 -1.99 5.92 -26.52 -0.16 -2.14 16 6 C 0.13 2.46 6.68 -3.95 -0.03 2.43 16 7 N -0.50 -12.33 3.19 -111.53 -0.36 -12.68 16 8 C 0.38 10.88 7.46 -155.99 -1.16 9.72 16 9 C -0.46 -13.01 9.13 -38.17 -0.35 -13.36 16 10 H 0.07 1.93 7.74 -52.49 -0.41 1.53 16 11 C 0.08 2.23 5.50 -17.29 -0.10 2.14 16 12 N -0.74 -21.40 11.90 55.56 0.66 -20.74 16 13 Si 0.91 19.66 29.56 -169.99 -5.03 14.63 16 14 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 N -0.52 -15.57 9.43 -12.93 -0.12 -15.69 16 18 C -0.01 -0.16 11.29 -18.00 -0.20 -0.37 16 19 C -0.14 -3.28 6.13 -81.37 -0.50 -3.78 16 20 H 0.06 0.87 7.76 -51.93 -0.40 0.47 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 1.05 8.11 -51.93 -0.42 0.63 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 30 H 0.13 3.03 7.86 -52.49 -0.41 2.62 16 LS Contribution 249.72 15.07 3.76 3.76 Total: -1.00 -32.09 249.72 -7.82 -39.91 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.16 Total: 0.04 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.58 Total: -9.22 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.18 Total: -49.12 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.09 -7.82 -39.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168917.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.360 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds