Wall clock time and date at job start Thu Apr 9 2020 14:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36884 * 126.39867 * 2 1 4 4 C 1.34668 * 106.82052 * 179.84203 * 3 2 1 5 5 C 1.50700 * 125.99250 * 180.19086 * 4 3 2 6 6 C 1.50697 * 109.47118 * 125.29303 * 5 4 3 7 7 H 1.07994 * 120.00520 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99334 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00453 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99392 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47295 * 60.00150 * 10 8 6 12 12 H 1.48502 * 109.46599 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47084 * 300.00126 * 10 8 6 14 14 N 1.34129 * 108.01593 * 0.41436 * 4 3 2 15 15 C 1.30492 * 109.26061 * 359.73617 * 14 4 3 16 16 C 1.50703 * 125.65293 * 179.97438 * 15 14 4 17 17 C 1.52996 * 117.49658 * 8.66484 * 16 15 14 18 18 C 1.52997 * 60.00024 * 252.50639 * 17 16 15 19 19 H 1.09002 * 109.47391 * 269.69436 * 1 2 3 20 20 H 1.09001 * 109.46813 * 149.69492 * 1 2 3 21 21 H 1.09004 * 109.47041 * 29.69619 * 1 2 3 22 22 H 1.08000 * 126.59052 * 359.97174 * 3 2 1 23 23 H 1.09003 * 109.46749 * 245.29323 * 5 4 3 24 24 H 1.09000 * 109.46845 * 5.28841 * 5 4 3 25 25 H 0.97004 * 119.99977 * 180.02562 * 9 8 6 26 26 H 1.09006 * 115.55072 * 154.36941 * 16 15 14 27 27 H 1.09001 * 117.49993 * 0.02562 * 17 16 15 28 28 H 1.09004 * 117.49841 * 145.01987 * 17 16 15 29 29 H 1.08997 * 117.50292 * 252.51071 * 18 17 16 30 30 H 1.09005 * 117.51232 * 107.47925 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 0.0036 5 6 4.7891 1.5026 0.0090 6 6 5.6636 1.1078 1.1710 7 1 5.3510 0.3185 1.8385 8 6 6.8636 1.7536 1.3812 9 7 7.2447 2.7143 0.5680 10 14 7.9474 1.2647 2.8220 11 1 8.3273 -0.1651 2.6929 12 1 9.1723 2.1043 2.8271 13 1 7.2040 1.4667 4.0915 14 7 3.5095 -0.6902 -0.0036 15 6 2.2664 -1.0870 -0.0057 16 6 1.8019 -2.5206 -0.0139 17 6 2.8605 -3.6073 0.1843 18 6 2.2303 -3.3954 -1.1937 19 1 -0.3634 -0.0055 1.0276 20 1 -0.3633 -0.8873 -0.5186 21 1 -0.3633 0.8927 -0.5091 22 1 1.9613 2.1345 -0.0004 23 1 5.3347 1.3551 -0.9231 24 1 4.5098 2.5519 0.1043 25 1 8.0891 3.1684 0.7157 26 1 0.8135 -2.6970 0.4106 27 1 3.8928 -3.2853 0.3209 28 1 2.5687 -4.4989 0.7393 29 1 1.5240 -4.1474 -1.5452 30 1 2.8479 -2.9338 -1.9643 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261187327.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:04 Heat of formation + Delta-G solvation = 79.549688 kcal Electronic energy + Delta-G solvation = -12929.012572 eV Core-core repulsion = 10726.083615 eV Total energy + Delta-G solvation = -2202.928957 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.38726 -36.73687 -33.97528 -32.60314 -29.82760 -27.67102 -26.00951 -23.56915 -22.22976 -22.01359 -19.54105 -18.82084 -16.45513 -16.00412 -15.33687 -14.97676 -14.36761 -14.13991 -13.27298 -12.79433 -12.70184 -12.16774 -11.92169 -11.54418 -11.30791 -11.19586 -10.68943 -10.57895 -10.39215 -10.31341 -9.72927 -9.25774 -8.93071 -8.70138 -8.24529 -7.31002 -5.86258 -3.85404 2.61701 3.28820 3.44529 3.46899 3.51621 3.83123 4.29972 4.61391 4.70614 4.89958 5.02819 5.08610 5.21713 5.29243 5.44805 5.49112 5.63921 5.75996 5.91558 6.20736 6.38594 6.47874 6.58640 6.95801 7.61365 7.62316 7.82853 7.95582 8.11921 8.56030 9.04072 9.18988 9.75957 11.24865 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.036349 B = 0.008526 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.126951 B = 3283.311226 C = 3751.279314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.468 5.468 3 C -0.093 4.093 4 C 0.060 3.940 5 C 0.091 3.909 6 C -0.493 4.493 7 H 0.057 0.943 8 C 0.053 3.947 9 N -0.902 5.902 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.470 5.470 15 C 0.211 3.789 16 C -0.079 4.079 17 C -0.152 4.152 18 C -0.165 4.165 19 H 0.067 0.933 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.166 0.834 23 H 0.031 0.969 24 H 0.030 0.970 25 H 0.260 0.740 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.192 -8.176 -1.932 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.154 5.154 3 C -0.222 4.222 4 C -0.069 4.069 5 C 0.053 3.947 6 C -0.532 4.532 7 H 0.075 0.925 8 C -0.147 4.147 9 N -0.543 5.543 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.205 1.205 14 N -0.190 5.190 15 C -0.049 4.049 16 C -0.099 4.099 17 C -0.189 4.189 18 C -0.204 4.204 19 H 0.086 0.914 20 H 0.097 0.903 21 H 0.098 0.902 22 H 0.184 0.816 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.520 -8.511 -1.956 16.095 hybrid contribution -0.268 0.489 0.861 1.026 sum -13.788 -8.022 -1.095 15.989 Atomic orbital electron populations 1.21844 0.78271 1.03707 1.02626 1.44985 1.06426 1.06739 1.57214 1.22449 0.91132 0.91638 1.16987 1.21674 0.95117 0.89913 1.00226 1.17665 0.87009 0.92104 0.97882 1.21051 1.03094 1.18164 1.10904 0.92482 1.24993 0.97790 0.95286 0.96645 1.69946 1.22411 1.24204 1.37694 0.86616 0.79730 0.78488 0.82914 1.20247 1.21425 1.20462 1.70120 1.16866 1.12883 1.19094 1.22147 0.86225 0.88808 1.07758 1.19956 0.99306 0.85185 1.05479 1.22964 0.99548 0.97854 0.98569 1.23005 1.03594 1.01523 0.92232 0.91442 0.90295 0.90247 0.81642 0.95059 0.95214 0.93083 0.87134 0.86884 0.88698 0.88726 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.91 59.85 0.65 1.52 16 2 N -0.47 -8.07 3.15 -121.27 -0.38 -8.45 16 3 C -0.09 -1.88 11.46 -16.56 -0.19 -2.07 16 4 C 0.06 1.46 6.30 -82.85 -0.52 0.94 16 5 C 0.09 2.55 5.54 -29.04 -0.16 2.39 16 6 C -0.49 -14.93 9.08 -34.44 -0.31 -15.24 16 7 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 8 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -27.90 13.29 55.43 0.74 -27.16 16 10 Si 0.89 22.86 29.54 -169.99 -5.02 17.84 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 N -0.47 -11.15 10.78 -7.07 -0.08 -11.23 16 15 C 0.21 4.03 7.44 -155.42 -1.16 2.87 16 16 C -0.08 -1.13 5.71 -91.77 -0.52 -1.66 16 17 C -0.15 -2.09 10.13 -26.73 -0.27 -2.36 16 18 C -0.17 -2.09 10.23 -26.73 -0.27 -2.36 16 19 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 20 H 0.08 0.70 7.68 -51.93 -0.40 0.31 16 21 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.17 2.88 8.06 -52.49 -0.42 2.46 16 23 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.11 1.25 7.93 -51.93 -0.41 0.84 16 27 H 0.11 1.89 7.88 -51.93 -0.41 1.49 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 264.90 15.07 3.99 3.99 Total: -1.00 -34.52 264.90 -7.75 -42.27 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.14 Total: -2.76 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.85 Total: -14.49 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.28 Total: -46.85 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.52 -7.75 -42.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261187327.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.816 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds